| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01033671001 |
| Family | PL1 |
| Protein Properties | Length: 431 Molecular Weight: 47619.3 Isoelectric Point: 6.2328 |
| Chromosome | Chromosome/Scaffold: 8 Start: 18784465 End: 18787365 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 150 | 280 | 0 |
| HYGWRTLSDGDGISIFGSRDIWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHDEVMLLGHSDSYVPDSGMQVTIAFNHFGEQLVQRMPRCRRGYIHV VNNDFTRWEMYAIGGSGSPTINSQGNRYTAP | |||
| Full Sequence |
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| Protein Sequence Length: 431 Download |
| MLDVDHSRRK PTQTHPSASA MLRRTCIVLI SLLSSLSALA TPMQNLTLLG QHPDPEAVVQ 60 EVQRRVNVSV SRRQTLEVSQ SDQSSSCVTG NPIDDCWRCD PNWEADRQRL ADCAIGFGQY 120 ALGGKGGQIY VVTDSSDHDA LQNPRRPPTH YGWRTLSDGD GISIFGSRDI WIDHCSLSHC 180 KDGLIDAVMG STGITISNNF FSHHDEVMLL GHSDSYVPDS GMQVTIAFNH FGEQLVQRMP 240 RCRRGYIHVV NNDFTRWEMY AIGGSGSPTI NSQGNRYTAP SNRNAKEVTK RVDTDEKKWR 300 DWNWRSEGDI LVNGAFFIAS GETVEVLYEK AYSVEPKSAA LIDQLTTNAG VLGGSGNNLG 360 TWRTERSGGG YGFGDDYSEN MLSGSPSSFA LSSTLLPPLF LLSSFLLLKR TIEMLFSLFC 420 WDITRYVALS * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-22 | 160 | 275 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-57 | 115 | 277 | 177 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-60 | 147 | 281 | 144 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30160.1 | 0 | 1 | 430 | 1 | 430 | unnamed protein product [Vitis vinifera] |
| GenBank | EEE51077.1 | 0 | 53 | 358 | 35 | 384 | hypothetical protein OsJ_31774 [Oryza sativa Japonica Group] |
| RefSeq | XP_002265853.1 | 0 | 1 | 145 | 95 | 238 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002265853.1 | 0 | 143 | 394 | 316 | 567 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 143 | 377 | 201 | 442 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 158 | 352 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_B | 0.0000000000003 | 91 | 147 | 2 | 53 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 158 | 352 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0.0000000000003 | 91 | 147 | 2 | 53 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_B | 1e-16 | 141 | 350 | 123 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 40 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC956551 | 239 | 143 | 381 | 0 |
| CJ770316 | 205 | 158 | 362 | 0 |
| DR088237 | 194 | 148 | 341 | 0 |
| BE036718 | 218 | 145 | 362 | 0 |
| EY149024 | 204 | 161 | 364 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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