| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01033751001 |
| Family | GT30 |
| Protein Properties | Length: 397 Molecular Weight: 44302 Isoelectric Point: 9.4079 |
| Chromosome | Chromosome/Scaffold: 8 Start: 18123856 End: 18135276 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT30 | 41 | 221 | 0 |
| RWPERLGRPSTPRPPGHLIWFHTASLGEGMAAIPVIKRCIEERPDCTILMTSTTASAFEIITNQLPTGVIYQFAPLDIPAAMDAFLGYWKPNAVMLMECE LWPNLILGAARNGIALALLNARMSAKSFSRWSRPVLLPLISLMLSKFSLIVPLSTMQGIRFQLLQAPPYVINFSGDLKYTV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 397 Download |
| MIGEKGKLLY NVYRALTYGL SPFLYLHLRF RTLQGIEHPV RWPERLGRPS TPRPPGHLIW 60 FHTASLGEGM AAIPVIKRCI EERPDCTILM TSTTASAFEI ITNQLPTGVI YQFAPLDIPA 120 AMDAFLGYWK PNAVMLMECE LWPNLILGAA RNGIALALLN ARMSAKSFSR WSRPVLLPLI 180 SLMLSKFSLI VPLSTMQGIR FQLLQAPPYV INFSGDLKYT VEEFDISKRG VQSIEELKVQ 240 LAHRRVWMVS SIHRGEEEVM LGVHKVLMRM HPDMVTIIVP RYPQHGREIA IELQKEGLSV 300 ALRSRDEKLV SGTSIYVVDT LGELRHFYTL TPIAVIGGSF LPGLTGHNIS EAAAAGCAVL 360 TGHHVGHFSD MVLKMQRSNP LSVLQDGSWP KLSLNY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 4.0e-59 | 41 | 219 | 181 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 5.0e-100 | 11 | 370 | 364 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 1.0e-106 | 8 | 371 | 366 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 10 | 385 | 8 | 383 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| EMBL | CBI30224.1 | 0 | 1 | 396 | 1 | 396 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277784.1 | 0 | 1 | 385 | 1 | 385 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 1 | 385 | 3 | 386 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 4 | 385 | 8 | 388 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 9e-19 | 59 | 371 | 43 | 317 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 2xcu_C | 9e-19 | 59 | 371 | 43 | 317 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 2xcu_B | 9e-19 | 59 | 371 | 43 | 317 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 2xcu_A | 9e-19 | 59 | 371 | 43 | 317 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 2xci_D | 9e-19 | 59 | 371 | 43 | 317 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DY266328 | 361 | 8 | 368 | 0 |
| DY279419 | 365 | 29 | 393 | 0 |
| DY288817 | 353 | 8 | 360 | 0 |
| FC917851 | 312 | 29 | 340 | 0 |
| FC901247 | 306 | 8 | 313 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |