| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01034245001 |
| Family | CBM43 |
| Protein Properties | Length: 484 Molecular Weight: 52838.8 Isoelectric Point: 5.8294 |
| Chromosome | Chromosome/Scaffold: 9 Start: 13415683 End: 13419746 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 364 | 445 | 4.8e-24 |
| WCVMKPSAGLDDPQVAPSVQYACEKADCTSLGYQTSCGGLDARGNISYAFNSYYQTHNQLDTACQFPNVSKIVKTDPSTGTC | |||
| GH17 | 24 | 342 | 0 |
| IGANWGTQATHPLPPETVVDLLRDNGIDKVKLFDADYGNLKALGKTRIEVMVGIPNEMLASLAGSVKSAEKWVAKNVSEHMTTNNVNIRYVAVGNEPFLE TYNGSFLRTTFPALQNIQSALIKAGLGNQVKVTVPLNADVYASSSGLPSGGDFRTDIHDYMIPIVKFLMDNNAPFTVNIYPFISLYIDSNFPVEYAFFDG NASPINDGGTYYYNMFDANYDTLVWALEKNGFGNLPIIVGEIGWPTDGDQNANLDYAQRFNQGFMTHISGGKGTPKRAGPVDAYLFSLIDEDAKSIQPGS FERHWGVFYFDGSPKYQFN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 484 Download |
| MGWLSVAYGL VSVFSLVVHS VSGIGANWGT QATHPLPPET VVDLLRDNGI DKVKLFDADY 60 GNLKALGKTR IEVMVGIPNE MLASLAGSVK SAEKWVAKNV SEHMTTNNVN IRYVAVGNEP 120 FLETYNGSFL RTTFPALQNI QSALIKAGLG NQVKVTVPLN ADVYASSSGL PSGGDFRTDI 180 HDYMIPIVKF LMDNNAPFTV NIYPFISLYI DSNFPVEYAF FDGNASPIND GGTYYYNMFD 240 ANYDTLVWAL EKNGFGNLPI IVGEIGWPTD GDQNANLDYA QRFNQGFMTH ISGGKGTPKR 300 AGPVDAYLFS LIDEDAKSIQ PGSFERHWGV FYFDGSPKYQ FNLGTTNSGS LIPARNVKHL 360 EQKWCVMKPS AGLDDPQVAP SVQYACEKAD CTSLGYQTSC GGLDARGNIS YAFNSYYQTH 420 NQLDTACQFP NVSKIVKTDP STGTCIFRIG IQQYYGSADR KKGGLQSPLI LVGHLILFLL 480 TVL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-6 | 256 | 334 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-12 | 363 | 429 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-26 | 363 | 447 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-79 | 24 | 342 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI38945.1 | 0 | 1 | 483 | 1 | 483 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273826.1 | 0 | 1 | 483 | 83 | 565 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309034.1 | 0 | 24 | 463 | 4 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331390.1 | 0 | 10 | 456 | 1 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530371.1 | 0 | 1 | 483 | 1 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 24 | 343 | 1 | 306 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 1aq0_B | 0 | 24 | 343 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 24 | 343 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 2cyg_A | 0 | 24 | 343 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 24 | 343 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
