| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01034635001 |
| Family | GT4 |
| Protein Properties | Length: 397 Molecular Weight: 44994.6 Isoelectric Point: 6.1168 |
| Chromosome | Chromosome/Scaffold: 13 Start: 13618650 End: 13619840 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 182 | 318 | 6.4e-21 |
| KSREEFVLLSVFKWEYRKGWDVLLRAYLKEFSMTDGIALYLLTNPYHSDGDFGNKIVEFVEDCGIEKPPNTWAPIYVIDTHIAQVDLPRVYAAADAFVLP SRGEGWGRPLVEAMAMSLPVIATNWSGPTEYLTDENS | |||
| Full Sequence |
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| Protein Sequence Length: 397 Download |
| MAPFLSGGGY SSEAWSYILS LHQHMKNPRF KLGIEQHGDL ESIEFWEGLP PHIKKLAFEL 60 HNTECRMNET IVVCHSEPGA WYPPLFQTFP CPPTGYGEFM YTIGRTMFET DRLNSEHVRR 120 CNQMDFVWVP TEFHVSTFVK SGVEPSKVVK IVQPIDVSFF DPLKHKPFDL ASIGKLVLGR 180 AKSREEFVLL SVFKWEYRKG WDVLLRAYLK EFSMTDGIAL YLLTNPYHSD GDFGNKIVEF 240 VEDCGIEKPP NTWAPIYVID THIAQVDLPR VYAAADAFVL PSRGEGWGRP LVEAMAMSLP 300 VIATNWSGPT EYLTDENSYP LPVDRMSEVM EGAFRGHLWA EPGVDQLGVL MRHVVSNPEE 360 ARGKGRKARE DMISRFSPEI VAGIVTHHIQ YILGNK* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00534 | Glycos_transf_1 | 2.0e-15 | 185 | 371 | 194 | + Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. | ||
| cd03808 | GT1_cap1E_like | 1.0e-15 | 267 | 382 | 117 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
| COG0438 | RfaG | 2.0e-21 | 84 | 396 | 313 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| cd03798 | GT1_wlbH_like | 1.0e-22 | 138 | 382 | 246 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 2.0e-23 | 71 | 382 | 322 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN61336.1 | 0 | 1 | 382 | 1 | 382 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI25012.1 | 0 | 1 | 396 | 1 | 396 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268345.1 | 0 | 1 | 385 | 90 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311937.1 | 0 | 1 | 393 | 1 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516632.1 | 0 | 1 | 393 | 96 | 492 | glycosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iw1_A | 0.004 | 267 | 334 | 263 | 335 | A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved In Lipopolysaccharide Biosynthesis |
| PDB | 2iv7_A | 0.004 | 267 | 334 | 263 | 335 | A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved In Lipopolysaccharide Biosynthesis |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FC063721 | 228 | 133 | 360 | 0 |
| HO456398 | 373 | 1 | 365 | 0 |
| DW120454 | 262 | 138 | 393 | 0 |
| EE620111 | 242 | 56 | 297 | 0 |
| CK255658 | 236 | 1 | 234 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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