y
Basic Information | |
---|---|
Species | Vitis vinifera |
Cazyme ID | GSVIVT01034985001 |
Family | CE8 |
Protein Properties | Length: 349 Molecular Weight: 38532.6 Isoelectric Point: 9.6455 |
Chromosome | Chromosome/Scaffold: 5 Start: 686536 End: 688008 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 55 | 339 | 0 |
KVDINGRGDFTSVQAAIDSVPEGNGKWTIIHIRKGVYKEKVHIPENKPYIFLRGNGRGRTSIVWSQSSKDNIESATFKVKAPHVVIFGISFKNDAPTGVA QTSQNQSVAAYVGAEMVAFYHCSFYSTHNTLFDYKGRHFYHNCYIQGSVDFIFGRGRSIFHNCEIFVIADQRVKISGSITAQNRQSGEDNSGFVFVKGKV YGIGGVYLGRAKGSHSRAVFAKVYMSRTIVPQGWTKWSYTGSTENLFQAEYKCYGPGAETENRASWSLQLTDEEAAPYLSVDFVD |
Full Sequence |
---|
Protein Sequence Length: 349 Download |
MSSPFLQAIH IAFLVIVSVS IPASHAAHNK SPNLNTTVLD SPLLTKKIGA NHTIKVDING 60 RGDFTSVQAA IDSVPEGNGK WTIIHIRKGV YKEKVHIPEN KPYIFLRGNG RGRTSIVWSQ 120 SSKDNIESAT FKVKAPHVVI FGISFKNDAP TGVAQTSQNQ SVAAYVGAEM VAFYHCSFYS 180 THNTLFDYKG RHFYHNCYIQ GSVDFIFGRG RSIFHNCEIF VIADQRVKIS GSITAQNRQS 240 GEDNSGFVFV KGKVYGIGGV YLGRAKGSHS RAVFAKVYMS RTIVPQGWTK WSYTGSTENL 300 FQAEYKCYGP GAETENRASW SLQLTDEEAA PYLSVDFVDG QKWLPAWL* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02497 | PLN02497 | 5.0e-76 | 53 | 344 | 295 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-79 | 54 | 344 | 291 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-80 | 1 | 344 | 361 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-88 | 1 | 345 | 355 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 1 | 348 | 348 | + Probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 1 | 348 | 1 | 346 | unknown [Glycine max] |
EMBL | CAN70978.1 | 0 | 1 | 298 | 1 | 300 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272939.1 | 0 | 1 | 348 | 1 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 37 | 347 | 32 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 37 | 348 | 40 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.00018e-42 | 48 | 346 | 5 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-33 | 48 | 344 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 9e-16 | 64 | 332 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 9e-16 | 64 | 332 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000000001 | 64 | 332 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |