| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01035089001 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 51896.4 Isoelectric Point: 5.4746 |
| Chromosome | Chromosome/Scaffold: 5 Start: 1380484 End: 1388778 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 70 | 416 | 0 |
| DKGGAQLYVPPGKWLTGSFNLTSHLTLFLERGAVILGSQDPSHWEVIEPLPSYGRGIELPGGRYRSLINGYMLRDVVITGDNGTINGQGSVWWDWFTSHS LNYSRPHLVEFLASTNVVVSNLTFLNAPAYNIHPVYCSNVRVQNISVYAPPESPYTVGIVPDSSDSTCIEDCSIAMGHDAIALKSGWDEYGIAYGRPTTN VHIRRVNLQSSSGSSLAFGSEMSGGISNVCVEQVHLYNSFSGIEFRTTKGRGGYIQEIIISDVAMENIHTAFSATGQIGSHPDDHFDPNALPVLDHITLQ NVIGTNITIAGSFTGIQESPFTSICLSNISLSTTPPASISWVCSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MLLPLLVILV LSNAVESNGQ ERGGQCTNSL TLDPRPHSVS ILEFGAVGDG KTLNTIAFQN 60 AIFYLKSFAD KGGAQLYVPP GKWLTGSFNL TSHLTLFLER GAVILGSQDP SHWEVIEPLP 120 SYGRGIELPG GRYRSLINGY MLRDVVITGD NGTINGQGSV WWDWFTSHSL NYSRPHLVEF 180 LASTNVVVSN LTFLNAPAYN IHPVYCSNVR VQNISVYAPP ESPYTVGIVP DSSDSTCIED 240 CSIAMGHDAI ALKSGWDEYG IAYGRPTTNV HIRRVNLQSS SGSSLAFGSE MSGGISNVCV 300 EQVHLYNSFS GIEFRTTKGR GGYIQEIIIS DVAMENIHTA FSATGQIGSH PDDHFDPNAL 360 PVLDHITLQN VIGTNITIAG SFTGIQESPF TSICLSNISL STTPPASISW VCSNVSGFSQ 420 WVFPEPCPSL ESSLLNSSST CLSRLNSSPT QTAVLSSESN LHEKTKPPSP LHCIIAPIAC 480 NV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-13 | 25 | 337 | 326 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-17 | 144 | 415 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-21 | 36 | 337 | 320 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-24 | 37 | 419 | 396 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-42 | 39 | 342 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 1 | 482 | 1 | 482 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 455 | 3 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314352.1 | 0 | 14 | 436 | 14 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 14 | 454 | 16 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516982.1 | 0 | 12 | 445 | 12 | 443 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000002 | 83 | 337 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
