Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01035102001 |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43323.2 Isoelectric Point: 6.9254 |
Chromosome | Chromosome/Scaffold: 5 Start: 1477611 End: 1481214 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 378 | 0 |
WDDACNHPGKSTLLVPNGTFFIGPISFIGPCQNNQSPKVEIRGTLKAPSSLKAFPTPSWIMFRQLQSLILTGETTTNTSLFDAQGEESWRHADCRHKLKC QFPTSIILVNVTNGNISNITLKNGKGFHMGIINSDNVTVHGVNITAPWNSPNTDGVHIGYSTNIHITSSTIGVGDDCVSIGPGSINITVFNTKCGPGHGI SVGSLGKYSAEKDVVGVRVKNCTINGTQNGVRIKTWPGSPASKASSFWFEDIVMINVSNPIIIDQEYCPWSTCTSSKPSLVKLSDIHFTNIRGTFNTKSA VALMCSSSVPCEDIQLLNINLTHT |
Full Sequence |
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Protein Sequence Length: 406 Download |
MLLLLFEIIT QSGTFSAESP ENDPAPDAAM IFDVTMYGAV GDGKTENGMA FLAAWDDACN 60 HPGKSTLLVP NGTFFIGPIS FIGPCQNNQS PKVEIRGTLK APSSLKAFPT PSWIMFRQLQ 120 SLILTGETTT NTSLFDAQGE ESWRHADCRH KLKCQFPTSI ILVNVTNGNI SNITLKNGKG 180 FHMGIINSDN VTVHGVNITA PWNSPNTDGV HIGYSTNIHI TSSTIGVGDD CVSIGPGSIN 240 ITVFNTKCGP GHGISVGSLG KYSAEKDVVG VRVKNCTING TQNGVRIKTW PGSPASKASS 300 FWFEDIVMIN VSNPIIIDQE YCPWSTCTSS KPSLVKLSDI HFTNIRGTFN TKSAVALMCS 360 SSVPCEDIQL LNINLTHTMA SSLQGGGHLS VKGALHRLEI NGSSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-75 | 23 | 383 | 367 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-75 | 26 | 374 | 365 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-80 | 34 | 381 | 352 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-90 | 59 | 383 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-124 | 1 | 375 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX45476.1 | 0 | 33 | 380 | 32 | 375 | polygalacturonase [Lilium longiflorum] |
EMBL | CAN69218.1 | 0 | 16 | 405 | 474 | 863 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 31 | 378 | 55 | 398 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 1 | 405 | 1 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 15 | 405 | 54 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 98 | 376 | 72 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00000000001 | 206 | 376 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000001 | 206 | 376 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000001 | 206 | 376 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000001 | 206 | 376 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |