| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01035103001 |
| Family | GH28 |
| Protein Properties | Length: 428 Molecular Weight: 45833.4 Isoelectric Point: 9.8203 |
| Chromosome | Chromosome/Scaffold: 5 Start: 1481462 End: 1483909 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 80 | 414 | 0 |
| VAACHWRGKARLLIPQGIFLIGQVTFQGPCNSPTPIIVQVAATLKAVTDISEFASPEWVTFEDINGLIVTGGGTFDGQGDVVWKYNDCRRNSNCQLLPTS IKFNSITNGNLRGINSVNAKSFHIAMNRCQNFRAFGLHITAPEDSPNTDGIHISSSNFVKVSKSIISTGDDCISIGQGSTNISINKVTCGPGHGISIGSL GKYPDEKDVIGIIVKNSTLMNTDNGLRIKTWPGSPPSQASGILFQDIIMKNVKNPIIIDQLYCPSGSSCRTQPSRVRISNIHYRNIRGTSSSPLGVNLMC SPQFPCQNVELFDINLRYSGKRRVSALTSSCSNVK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 428 Download |
| MATARGIILY SFLLCSFALV SSRANAGYHP RVGRGQGGVA HHGGRGRGSI PGETIFNVLQ 60 YGAKPGGKKD STEAFMKAWV AACHWRGKAR LLIPQGIFLI GQVTFQGPCN SPTPIIVQVA 120 ATLKAVTDIS EFASPEWVTF EDINGLIVTG GGTFDGQGDV VWKYNDCRRN SNCQLLPTSI 180 KFNSITNGNL RGINSVNAKS FHIAMNRCQN FRAFGLHITA PEDSPNTDGI HISSSNFVKV 240 SKSIISTGDD CISIGQGSTN ISINKVTCGP GHGISIGSLG KYPDEKDVIG IIVKNSTLMN 300 TDNGLRIKTW PGSPPSQASG ILFQDIIMKN VKNPIIIDQL YCPSGSSCRT QPSRVRISNI 360 HYRNIRGTSS SPLGVNLMCS PQFPCQNVEL FDINLRYSGK RRVSALTSSC SNVKAGFGGV 420 QIPPPCR* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 4.0e-90 | 49 | 426 | 380 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-93 | 49 | 423 | 381 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-98 | 53 | 426 | 381 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-106 | 83 | 416 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-153 | 4 | 426 | 425 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 1 | 421 | 1 | 421 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN69218.1 | 0 | 55 | 398 | 489 | 836 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36886.1 | 0 | 1 | 426 | 1 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 1 | 427 | 1 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314372.1 | 0 | 51 | 427 | 44 | 410 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 1e-21 | 81 | 418 | 8 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-21 | 81 | 418 | 8 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-21 | 81 | 418 | 8 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-21 | 81 | 418 | 8 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 1e-21 | 81 | 418 | 8 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
