| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01036921001 |
| Family | GT4 |
| Protein Properties | Length: 406 Molecular Weight: 45624.4 Isoelectric Point: 9.3894 |
| Chromosome | Chromosome/Scaffold: 2 Start: 17582981 End: 17584459 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 225 | 363 | 7e-24 |
| ILGVSGRLVKDKGHAILHEAFSRFIKRHPDAYLIVAGSGPWENRYKDLGRQVLVLGSLNPSQLRAFYNSIDIFVNPTLRPQGLDITLMEVMMSGKAVLAS RFPSIKGTIVVDDEYGFMFSPNVESLLQAMEQVVKEGRS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 406 Download |
| MAPNTKPKRG FLPPQTSLTR ILFFIVLFTI SARLVLHVPS SISNPFSSHV RPWTGDLRGA 60 EIHFHEGEPG RWAYNRAWEQ FLEENSQVPF DVVHSESVAL PHSLAKTLPN LAVSWHGIAL 120 ESLSSYIYQD LALRPPGEPI SPGFNRSVQG VIPKVLNEIR FFHNYAHHVA TSDSSGEVLR 180 DVYQIPTQRV HVILNGVDEE DFRQDLQLGH QFRSRIGIPQ NASLILGVSG RLVKDKGHAI 240 LHEAFSRFIK RHPDAYLIVA GSGPWENRYK DLGRQVLVLG SLNPSQLRAF YNSIDIFVNP 300 TLRPQGLDIT LMEVMMSGKA VLASRFPSIK GTIVVDDEYG FMFSPNVESL LQAMEQVVKE 360 GRSRLAQRGK ACRRYAASMF TATKMALAYE RLFLCIKNET FCMYP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03811 | GT1_WabH_like | 2.0e-27 | 152 | 382 | 239 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
| cd03807 | GT1_WbnK_like | 4.0e-31 | 160 | 393 | 243 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
| TIGR00032 | argG | 2.0e-32 | 160 | 392 | 241 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| cd03798 | GT1_wlbH_like | 4.0e-36 | 72 | 393 | 336 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 1.0e-45 | 63 | 393 | 342 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29225.1 | 0 | 1 | 405 | 1 | 405 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002271072.1 | 0.000000001 | 1 | 70 | 1 | 71 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271072.1 | 0 | 62 | 405 | 150 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271108.1 | 2e-30 | 1 | 70 | 1 | 70 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271108.1 | 0 | 62 | 405 | 149 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gek_A | 0.0000006 | 236 | 385 | 222 | 377 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| PDB | 2gej_A | 0.0000006 | 236 | 385 | 222 | 377 | A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man |
| PDB | 3oka_B | 0.00003 | 213 | 323 | 189 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3oka_A | 0.00003 | 213 | 323 | 189 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okp_A | 0.00003 | 213 | 323 | 189 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
