| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01036924001 |
| Family | GT4 |
| Protein Properties | Length: 422 Molecular Weight: 46704.2 Isoelectric Point: 8.0443 |
| Chromosome | Chromosome/Scaffold: 2 Start: 17518996 End: 17520457 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 241 | 378 | 2e-21 |
| VLGVAGRLVKDKGHPILHAAFSRFMKRHPDAYLIVAGSGPWENRYKDLGRQVLVLGSMNASQLRAFYNSIDIFANPTLRPQGVDQTQVEAMLSGKAILAS RLPSIKRNVVVDDEYGFMFSPNAESLLEAMEQVAKEGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MPLPPPSPTP SPPMSVPGPV TSVELNSPGT AWRWTGAVPH PSSSRSRSSQ GNGLLAQPQV 60 AWSATPTGCT QPYPAAATAI HFHEGEPGRW VYNKAWEQFL EENSLDPFDV VHSESVALPH 120 SLAKTLPNLA VSWHGIALEN LMSDIYQELA LRRPGEPISP GFNGQRAVLK VLNEIRFFHD 180 YAHHVATSDS SGEIIRDVYQ IPTQRVHVIL NGVDEEDYQQ DWQLGHQFRS RIGIPQNASL 240 VLGVAGRLVK DKGHPILHAA FSRFMKRHPD AYLIVAGSGP WENRYKDLGR QVLVLGSMNA 300 SQLRAFYNSI DIFANPTLRP QGVDQTQVEA MLSGKAILAS RLPSIKRNVV VDDEYGFMFS 360 PNAESLLEAM EQVAKEGRSR LAQRGKACRR YAVSMFSATK MALAYERLFL CIKNEIFCMY 420 P* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0438 | RfaG | 1.0e-27 | 89 | 415 | 337 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| cd03807 | GT1_WbnK_like | 2.0e-28 | 185 | 409 | 233 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
| TIGR00032 | argG | 8.0e-29 | 176 | 408 | 241 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| cd03798 | GT1_wlbH_like | 7.0e-34 | 107 | 409 | 318 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 5.0e-44 | 107 | 409 | 315 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29225.1 | 0 | 80 | 421 | 62 | 405 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI29227.1 | 0 | 1 | 421 | 1 | 421 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002265923.1 | 0 | 80 | 421 | 157 | 498 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271072.1 | 0 | 30 | 421 | 107 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271108.1 | 0 | 80 | 421 | 149 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gek_A | 0.0000007 | 252 | 401 | 222 | 377 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 2gej_A | 0.0000007 | 252 | 401 | 222 | 377 | A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man |
| PDB | 3oka_B | 0.0009 | 229 | 339 | 189 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3oka_A | 0.0009 | 229 | 339 | 189 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3okp_A | 0.001 | 229 | 339 | 189 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AM732415 | 287 | 103 | 387 | 0 |
| FG163343 | 245 | 178 | 422 | 0 |
| GR186222 | 262 | 115 | 374 | 0 |
| CO985029 | 226 | 197 | 422 | 0 |
| EY168486 | 217 | 204 | 420 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |