| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01037825001 |
| Family | CBM22 |
| Protein Properties | Length: 553 Molecular Weight: 61676.8 Isoelectric Point: 8.2204 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7441440 End: 7444729 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| CBM22 | 23 | 138 | 1.7e-22 |
| IVLNPELDDGLEGWSAFGEAKIEERVSGGNNFIVAHSRNQPYDSSSQKLHLQKDKLYTFSAWIQVSSGSAPVAAVLKTNAGLKYAGAVVAESGCWSMLKG GLTVDASGPAQLYFES | |||
| GH10 | 197 | 461 | 0 |
| QNKANFPIGAVINEFVINNTVYQNWFTKRFTVATFGNQLKWYSNERSPGKENYSFPDAMLQFCKKNGINVRGHNILWDDPVMQPKWVPSLSPTQLRSAAD RRINSVVNRYRGQFIAWDVVNENLHFTFFEDRLGANYSAAVFQKTHQLDPEPVLFLNDYNTLERIDDASVKPRRYLEKLKEIRSFSGGKLSLGIGLEGHF EAAPNLPYVRAAIDTLAEAKVPVWITELDVSTMPDQARHFGEILEEAHAHPAVNGIVTFGTWSPR | |||
| Full Sequence |
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| Protein Sequence Length: 553 Download |
| MITQPVWRQC LEKPHKAQYG GGIVLNPELD DGLEGWSAFG EAKIEERVSG GNNFIVAHSR 60 NQPYDSSSQK LHLQKDKLYT FSAWIQVSSG SAPVAAVLKT NAGLKYAGAV VAESGCWSML 120 KGGLTVDASG PAQLYFESKN TSVEIWVDSI SLQPFTQEQW KSHQHQSVEK TRKRNVRLQA 180 IDVKGNPITG ATMALKQNKA NFPIGAVINE FVINNTVYQN WFTKRFTVAT FGNQLKWYSN 240 ERSPGKENYS FPDAMLQFCK KNGINVRGHN ILWDDPVMQP KWVPSLSPTQ LRSAADRRIN 300 SVVNRYRGQF IAWDVVNENL HFTFFEDRLG ANYSAAVFQK THQLDPEPVL FLNDYNTLER 360 IDDASVKPRR YLEKLKEIRS FSGGKLSLGI GLEGHFEAAP NLPYVRAAID TLAEAKVPVW 420 ITELDVSTMP DQARHFGEIL EEAHAHPAVN GIVTFGTWSP RGCYRMCLTD GNFKNLPPGD 480 VLDKLLKQWS HEGLVGVTNA DGFFDSSLFH GDYQVRVTHP TLMTKSSLIH SFKVPSTDTS 540 QEAAVLLVKV SA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 9.0e-9 | 30 | 142 | 123 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-29 | 190 | 427 | 248 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-53 | 199 | 474 | 299 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-73 | 235 | 482 | 271 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22444.1 | 0 | 1 | 552 | 1 | 552 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI22449.1 | 0 | 9 | 551 | 12 | 556 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002264556.1 | 0 | 9 | 552 | 119 | 658 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264652.1 | 0 | 9 | 551 | 38 | 582 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264837.1 | 0 | 9 | 552 | 55 | 598 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-25 | 204 | 482 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1x_A | 2e-24 | 226 | 488 | 40 | 303 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1w_A | 2e-24 | 226 | 488 | 40 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1tux_A | 3e-24 | 226 | 486 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1k6a_A | 7e-24 | 226 | 488 | 40 | 303 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX266128 | 292 | 218 | 508 | 0 |
| GR150167 | 264 | 13 | 275 | 0 |
| GR160803 | 256 | 51 | 306 | 0 |
| GE471597 | 300 | 136 | 435 | 0 |
| EX266128 | 64 | 494 | 549 | 0.003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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