| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01037833001 |
| Family | CBM22 |
| Protein Properties | Length: 1131 Molecular Weight: 125705 Isoelectric Point: 6.7821 |
| Chromosome | Chromosome/Scaffold: 3 Start: 7374686 End: 7389061 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 70 | 185 | 8.8e-21 |
| IILNPELNHGLKGWSAFGGAEMENRASGGNTFIVAHSRKQMNDSISQKLHLHKDKLYTFSAWIQVSSGNTPVTAVFRTNSGPQYAGAVFAESGCWSMLKG GLTVDSSGPAELYFES | |||
| GH10 | 244 | 520 | 0 |
| QNKLNFPFGSAISKYILSNTAYQNWFTSRFTVTVFENELKWYSTEWSRGKEDYSVPDAMLRFAKQHGLAVRGHNILWDNGNNQPSWVPSLSNSELQAAVD KRINSVVRRYSGQFIGWDVVNENLHFSFFESRLGAKATGVAFQKTRQLDGRTTLFMNEYDTIEKSGKGSASPDKYLQKLREIQSFLRGGGNLGIGLEGHF RTPNIPYMRSAIDKLAAAKFPIWITELDVDPSQPMHLDQVLREAHAHPAIHGIVMWAAWKPEGCFRMCLTDSNFKNT | |||
| GH10 | 777 | 1039 | 0 |
| RQQKLSFPFGNAMNKYILDNPAHQNWFTSRFTATAFEDALKWYTNEPSPGKEDYSDADALFQFSEQNQIAVRGHNILWDDPKYLPGWLLSLSPSQIRSDA DKRINSVVQRYIGKVNSWDVVNENLHTSFFEDKLGPNASAVFFQETRQLDKTTPLFMNEYNTLENGGDPLSTPAKYIQKLRDIQSFSPDIGSVGIGLQGH FHTPDLAYMRSSLDTLAAAKLPIWITELDVASSPDQASYLEQVLSEAHAHPAVVGIVMWAAWK | |||
| Full Sequence |
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| Protein Sequence Length: 1131 Download |
| MSSSGPDLVC QLDNVQALLF LRSQLLSVED LENGIYISFF GLANDALSYD YTASLECLEK 60 PHKPQYGGGI ILNPELNHGL KGWSAFGGAE MENRASGGNT FIVAHSRKQM NDSISQKLHL 120 HKDKLYTFSA WIQVSSGNTP VTAVFRTNSG PQYAGAVFAE SGCWSMLKGG LTVDSSGPAE 180 LYFESEDTSV EIWVDSISLQ PFTQEQWTSH QDQSIEKTRK RKVRLQATDA HGNPIAGAKM 240 AIKQNKLNFP FGSAISKYIL SNTAYQNWFT SRFTVTVFEN ELKWYSTEWS RGKEDYSVPD 300 AMLRFAKQHG LAVRGHNILW DNGNNQPSWV PSLSNSELQA AVDKRINSVV RRYSGQFIGW 360 DVVNENLHFS FFESRLGAKA TGVAFQKTRQ LDGRTTLFMN EYDTIEKSGK GSASPDKYLQ 420 KLREIQSFLR GGGNLGIGLE GHFRTPNIPY MRSAIDKLAA AKFPIWITEL DVDPSQPMHL 480 DQVLREAHAH PAIHGIVMWA AWKPEGCFRM CLTDSNFKNT PTGDVVDKLL QQWTHAGLVG 540 TTDADGFFET SLFHGDYEVA ITHPTVTNSS LIHSFKVASS TDISPESALL CLANPHKPQY 600 GGGIIRNPEL NQGLKGWSTF GGAKIERRES GGNHFIVAHS RNQTYGSFSQ KLYLQKDKLY 660 TFSAWIQVSG GNAAVAAVFK TSDGFKHAGA IFAESGCWSM LKGGLTMKSS GPADLFFESK 720 NTKVEIWVDS ISLQPFIQEQ WKSHQDQSIE KTRKTKVRIQ AIDARGNPLP GATVQARQQK 780 LSFPFGNAMN KYILDNPAHQ NWFTSRFTAT AFEDALKWYT NEPSPGKEDY SDADALFQFS 840 EQNQIAVRGH NILWDDPKYL PGWLLSLSPS QIRSDADKRI NSVVQRYIGK VNSWDVVNEN 900 LHTSFFEDKL GPNASAVFFQ ETRQLDKTTP LFMNEYNTLE NGGDPLSTPA KYIQKLRDIQ 960 SFSPDIGSVG IGLQGHFHTP DLAYMRSSLD TLAAAKLPIW ITELDVASSP DQASYLEQVL 1020 SEAHAHPAVV GIVMWAAWKP EGCFRMCLTD GQFKNLATGD VVDKLISQWT GRFVGMTNAD 1080 GFLETSLFHG DYEVSISHPT LKNSSLIHGF KVAPTDHMSQ EKEMLVTLSA * 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 4.0e-30 | 238 | 477 | 256 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-43 | 248 | 499 | 273 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-47 | 783 | 1035 | 272 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-62 | 282 | 526 | 269 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 5.0e-68 | 816 | 1062 | 271 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22450.1 | 0 | 1 | 1130 | 1 | 1130 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002264556.1 | 0 | 27 | 591 | 88 | 654 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264556.1 | 0 | 559 | 1130 | 98 | 658 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264605.1 | 0 | 39 | 591 | 17 | 570 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264605.1 | 0 | 587 | 1130 | 31 | 574 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 2e-25 | 760 | 1053 | 8 | 288 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1tux_A | 3e-22 | 251 | 530 | 18 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1nq6_A | 1e-24 | 251 | 526 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1nq6_A | 2e-23 | 785 | 1062 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1ta3_B | 9e-24 | 785 | 1035 | 17 | 268 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX266128 | 277 | 797 | 1071 | 0 |
| EX266128 | 279 | 264 | 539 | 0 |
| GR150167 | 263 | 60 | 321 | 0 |
| EX266128 | 43 | 538 | 577 | 0.043 |
| EX266128 | 41 | 1075 | 1112 | 1.7 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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