| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01038117001 |
| Family | GH19 |
| Protein Properties | Length: 307 Molecular Weight: 32395 Isoelectric Point: 4.5914 |
| Chromosome | Chromosome/Scaffold: 5 Start: 23590739 End: 23600976 |
| Description | homolog of carrot EP3-3 chitinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH19 | 106 | 306 | 0 |
| VSDVVTEDFFNGIISQAAGSCAGKNFYSRNAFLDAVSSYPQFGQDGSADDSKREIAAFFAHVTHETGHFCYIEEIDGASKDYCDESNTQYPCVAGKGYYG RGPLQISWNYNYGPAGQSIGFDGLNNPETVANDPVVSFKTAFWFWMNNVHSIIGQGFGATIRAINSMECGGGNTAAVNARIGYYTDYCNQFSVSTGDNLS C | |||
| Full Sequence |
|---|
| Protein Sequence Length: 307 Download |
| MGFCCIVVFH KDLGFYKYPT KVSTLSSHFS HSSLDMAIKL VAILLVGVLA GALPAFVLAQ 60 NCGCDAGLCC SQWGYCGTGD DFCGTGCQAG PCYSSGGGGG NGSVSVSDVV TEDFFNGIIS 120 QAAGSCAGKN FYSRNAFLDA VSSYPQFGQD GSADDSKREI AAFFAHVTHE TGHFCYIEEI 180 DGASKDYCDE SNTQYPCVAG KGYYGRGPLQ ISWNYNYGPA GQSIGFDGLN NPETVANDPV 240 VSFKTAFWFW MNNVHSIIGQ GFGATIRAIN SMECGGGNTA AVNARIGYYT DYCNQFSVST 300 GDNLSC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3179 | COG3179 | 0.0003 | 133 | 250 | 151 | + Predicted chitinase [General function prediction only] | ||
| cd00442 | lysozyme_like | 5.0e-8 | 196 | 252 | 57 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
| pfam00182 | Glyco_hydro_19 | 9.0e-96 | 111 | 306 | 230 | + Chitinase class I. | ||
| cd00325 | chitinase_glyco_hydro_19 | 1.0e-104 | 111 | 306 | 229 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004568 | chitinase activity |
| GO:0006032 | chitin catabolic process |
| GO:0008061 | chitin binding |
| GO:0016998 | cell wall macromolecule catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN66296.1 | 0 | 36 | 306 | 1 | 266 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI24655.1 | 0 | 1 | 306 | 1 | 306 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274819.1 | 0 | 61 | 306 | 26 | 273 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002274905.1 | 0 | 36 | 306 | 1 | 267 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002274935.1 | 0 | 36 | 306 | 1 | 271 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hbh_A | 0 | 105 | 306 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 3hbe_X | 0 | 105 | 306 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 3hbd_A | 0 | 105 | 306 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 4dyg_B | 0 | 104 | 306 | 1 | 237 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 4dyg_A | 0 | 104 | 306 | 1 | 237 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
| chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
| chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
| chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
