y
Basic Information | |
---|---|
Species | Vitis vinifera |
Cazyme ID | GSVIVT01038241001 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 40633.2 Isoelectric Point: 8.0764 |
Chromosome | Chromosome/Scaffold: 5 Start: 24552749 End: 24554976 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 50 | 379 | 0 |
AAACASASPATIYVPPGRYFLRNAVFSGCKNHAITFRIDATLVAPADYRVIGNAGNWLAFEDVTGVSILGGILDGQGTGLWACKNSGKSCPSGATTLGFT NSNNILISGLTSLNSQKFHIVINGCQNVKLQGVRVSASGDSPNTDGIHVQLSSGVTILDTKIKTGDDCVSIGPGASNLWIENVACGPGHGISVGSLGKEL KEAGVQNVTVKTVTFTGSQNGVRIKSWARASSGFARGILFQHILMVDVQNPILIDQNYCPDNKNCPGQVSGVKVSDVTYQDIHGTSATEVAVKFDCSSKN PCSGINLKDVKLTYKNKAAEASCANADGKA |
Full Sequence |
---|
Protein Sequence Length: 390 Download |
MGFNSMILVF IVVVGLCPYW AAAVTYNVVN LGAKGDGKTD STKAFLHAWA AACASASPAT 60 IYVPPGRYFL RNAVFSGCKN HAITFRIDAT LVAPADYRVI GNAGNWLAFE DVTGVSILGG 120 ILDGQGTGLW ACKNSGKSCP SGATTLGFTN SNNILISGLT SLNSQKFHIV INGCQNVKLQ 180 GVRVSASGDS PNTDGIHVQL SSGVTILDTK IKTGDDCVSI GPGASNLWIE NVACGPGHGI 240 SVGSLGKELK EAGVQNVTVK TVTFTGSQNG VRIKSWARAS SGFARGILFQ HILMVDVQNP 300 ILIDQNYCPD NKNCPGQVSG VKVSDVTYQD IHGTSATEVA VKFDCSSKNP CSGINLKDVK 360 LTYKNKAAEA SCANADGKAS GFIEPESCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-85 | 60 | 380 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-86 | 28 | 389 | 370 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-86 | 22 | 386 | 372 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-100 | 6 | 388 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-134 | 8 | 389 | 383 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN68142.1 | 0 | 1 | 389 | 1 | 389 | hypothetical protein [Vitis vinifera] |
EMBL | CAN78679.1 | 0 | 18 | 389 | 5 | 376 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002263164.1 | 0 | 4 | 389 | 8 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 4 | 389 | 8 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002279845.1 | 0 | 27 | 389 | 22 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 151 | 362 | 159 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 9e-18 | 22 | 369 | 17 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 0.000000000000003 | 53 | 374 | 45 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000000000000003 | 53 | 374 | 45 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.00000000000002 | 51 | 371 | 16 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |