| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01038243001 |
| Family | GH28 |
| Protein Properties | Length: 390 Molecular Weight: 41728.8 Isoelectric Point: 10.1492 |
| Chromosome | Chromosome/Scaffold: 5 Start: 24567539 End: 24569053 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 378 | 0 |
| WAAACRSTTASTIYVPKGSFLVKAAVFRGPCKSTIKIMIDGTIVAPDYRSMGNSGYWILFIDVDKVAIFGGTLDAKGAAYWACRRSGKSCPIGARSITFN WANNIVVSGLTSINSQLSHLVINSCKNVAVRNVKIIAPDQSPNTDGIHVQGSTGVTITGSTIGTGDDCISIGPGTRNLWMEHIKCGPGHGISIGSLGKDK KEDGVQNVTLTNSVFIGSDNGVRIKSWARPSNSFVTNIVFRNIVMTRVQYPIIVDQNYCPNNQGCPNQSSGVKVSQVTYRNIKGTSRSQAAMIFNCSSSN PCRGIRLQDINLTYMNKAATSTCRNVHGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 390 Download |
| MARLFFTFII SLFLTPFIFT TPSNAAYNVV SFGAKSGGQT DSTQAFLKAW AAACRSTTAS 60 TIYVPKGSFL VKAAVFRGPC KSTIKIMIDG TIVAPDYRSM GNSGYWILFI DVDKVAIFGG 120 TLDAKGAAYW ACRRSGKSCP IGARSITFNW ANNIVVSGLT SINSQLSHLV INSCKNVAVR 180 NVKIIAPDQS PNTDGIHVQG STGVTITGST IGTGDDCISI GPGTRNLWME HIKCGPGHGI 240 SIGSLGKDKK EDGVQNVTLT NSVFIGSDNG VRIKSWARPS NSFVTNIVFR NIVMTRVQYP 300 IIVDQNYCPN NQGCPNQSSG VKVSQVTYRN IKGTSRSQAA MIFNCSSSNP CRGIRLQDIN 360 LTYMNKAATS TCRNVHGTRS GVVVPRSCV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-85 | 54 | 376 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-86 | 28 | 386 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-86 | 29 | 388 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-94 | 27 | 388 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-152 | 27 | 389 | 366 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002275740.1 | 0 | 1 | 389 | 1 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309713.1 | 0 | 1 | 389 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 389 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529096.1 | 0 | 8 | 389 | 5 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529097.1 | 0 | 3 | 389 | 4 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 3e-23 | 119 | 375 | 81 | 333 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1ib4_A | 3e-23 | 119 | 375 | 81 | 333 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 1ia5_A | 3e-23 | 119 | 375 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 2e-22 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-22 | 119 | 375 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
