y
Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma01g04970.1 |
Family | PL1 |
Protein Properties | Length: 449 Molecular Weight: 50659.5 Isoelectric Point: 8.9666 |
Chromosome | Chromosome/Scaffold: 01 Start: 4642857 End: 4646062 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 168 | 367 | 0 |
IIFARSMNIRLSQELIMTSDKTIDGRGVDVYIANGAGITIQFIKNVIIHGIKIFNIQVGNGGLIRDSETHYGFRTYSDGDGISIFGSSNVWIDHVSMRNC KDGLIDAIQGSTAITISNGHFTDHNEVMLFGASDSYDGDKIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAP |
Full Sequence |
---|
Protein Sequence Length: 449 Download |
MAKIHNFYLL TCLVVMIPTL YANVKEDEAY WKRQSEVLLV DSYWQERASI AEKENQQAYT 60 SDPYSLTKNL TFSVSEIIIG EKSGRRNLRG RGGKCMATNP IDRCWRCDPN WANNRKKLAD 120 CVQGFGRNTI GGKNGPFYVV NSSLDNDMVN PAPGTLRHAV TRSGPLWIIF ARSMNIRLSQ 180 ELIMTSDKTI DGRGVDVYIA NGAGITIQFI KNVIIHGIKI FNIQVGNGGL IRDSETHYGF 240 RTYSDGDGIS IFGSSNVWID HVSMRNCKDG LIDAIQGSTA ITISNGHFTD HNEVMLFGAS 300 DSYDGDKIMQ ITLAFNHFGK RLVQRMPRCR YGFVHVVNND YTHWEMYAIG GSKHPTIISE 360 GNRFIAPNNV YAKEITKREY SPEQEWKNWQ WRSINDEYMN GAFFREGGSQ ITDRPFSRQD 420 MITAKPGSYV GRLTRYAGSL RCIVGKPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 0.0001 | 41 | 88 | 49 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 9.0e-26 | 123 | 364 | 271 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-56 | 180 | 364 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 174 | 368 | 206 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 15 | 448 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 15 | 448 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 14 | 448 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 9 | 448 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 448 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 438 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 438 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 119 | 373 | 15 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 163 | 341 | 108 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000007 | 247 | 376 | 205 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |