| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma01g08760.1 |
| Family | CE8 |
| Protein Properties | Length: 370 Molecular Weight: 40408 Isoelectric Point: 8.4192 |
| Chromosome | Chromosome/Scaffold: 01 Start: 10355583 End: 10357514 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 71 | 356 | 0 |
| VKVMQDGSGEFKTITDAIKSIPSGNTKRVIIYIGAGNYNEKIKIEKTKPFVTLYGVPEKMPNLTFGGTAQQYGTVDSATLIVESDYFVAANIMISNTAPR PDPKTPGGQAVALRISGDKAAFYNCKMYGFQDTICDDRNRHFFKDCLIQGTMDYIFGSGKSLYVSTELRTLGDNGITVIVAQARKSETEDNAYSFVHCDV TGTGTGTFLGRAWMSHPRVVFAYSNMSDIVNKLGWSNNNHPEHDKTVRFGEYQNSGPGADPKGRATITKQLSEREVKPYITLAMIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 370 Download |
| MASRTICFTI QVTLVVAFLT TKVVLSDDTV PIPANKAQLG EWYNTNVGPL DQRKSTVDPA 60 LVTAEEGAKV VKVMQDGSGE FKTITDAIKS IPSGNTKRVI IYIGAGNYNE KIKIEKTKPF 120 VTLYGVPEKM PNLTFGGTAQ QYGTVDSATL IVESDYFVAA NIMISNTAPR PDPKTPGGQA 180 VALRISGDKA AFYNCKMYGF QDTICDDRNR HFFKDCLIQG TMDYIFGSGK SLYVSTELRT 240 LGDNGITVIV AQARKSETED NAYSFVHCDV TGTGTGTFLG RAWMSHPRVV FAYSNMSDIV 300 NKLGWSNNNH PEHDKTVRFG EYQNSGPGAD PKGRATITKQ LSEREVKPYI TLAMIEGSKW 360 LLPPPTPKV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 1.0e-80 | 67 | 361 | 306 | + pectinesterase | ||
| PLN02432 | PLN02432 | 1.0e-81 | 68 | 361 | 294 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 2.0e-82 | 73 | 363 | 299 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 6.0e-99 | 7 | 363 | 365 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 4 | 365 | 362 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU13228.1 | 0 | 1 | 218 | 1 | 218 | unknown [Glycine max] |
| GenBank | ACU14235.1 | 0 | 1 | 248 | 1 | 248 | unknown [Glycine max] |
| RefSeq | XP_002309337.1 | 0 | 4 | 365 | 5 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002318197.1 | 0 | 10 | 365 | 7 | 363 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511043.1 | 0 | 3 | 365 | 2 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-36 | 71 | 367 | 9 | 314 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8e-35 | 73 | 361 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 1e-18 | 68 | 238 | 6 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 1e-18 | 68 | 238 | 6 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 1e-18 | 68 | 238 | 6 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
