| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma01g14500.2 |
| Family | GH28 |
| Protein Properties | Length: 273 Molecular Weight: 30373.3 Isoelectric Point: 9.4584 |
| Chromosome | Chromosome/Scaffold: 01 Start: 18130229 End: 18132625 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 34 | 259 | 0 |
| LHFRECDNLFLSGLIHLNSPKNHISIIRCNNSLISNLHMIAPNESPNTDENVISHSSNISIKNSKMEIDCIAINHGSTFISIIGVFCKPGHGIRENGAHQ TVEEICVRNCTFNRTTNGARIKTWIIRSDSSQGYARKITFKDIKLVEATNLVIIDQLYNPCDNVCAVRVNDVSYHNVRGISSSTHAIKLYFDKIIGYTNI VLKGVKVTTYTKKKTYASCKHVKGVC | |||
| Full Sequence |
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| Protein Sequence Length: 273 Download |
| MTLVMGPLLV RIASRSPLYI TINFRVMDAL KLSLHFRECD NLFLSGLIHL NSPKNHISII 60 RCNNSLISNL HMIAPNESPN TDENVISHSS NISIKNSKME IDCIAINHGS TFISIIGVFC 120 KPGHGIRENG AHQTVEEICV RNCTFNRTTN GARIKTWIIR SDSSQGYARK ITFKDIKLVE 180 ATNLVIIDQL YNPCDNVCAV RVNDVSYHNV RGISSSTHAI KLYFDKIIGY TNIVLKGVKV 240 TTYTKKKTYA SCKHVKGVCS LCNPHVSCLS HK* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 5.0e-27 | 33 | 222 | 202 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-28 | 30 | 256 | 245 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-31 | 33 | 260 | 244 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 3.0e-44 | 33 | 260 | 240 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-45 | 33 | 270 | 260 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 33 | 272 | 157 | 399 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 33 | 269 | 145 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | XP_002324855.1 | 0 | 24 | 270 | 140 | 395 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332134.1 | 0 | 33 | 270 | 118 | 361 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 33 | 270 | 147 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.0000003 | 34 | 212 | 103 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000003 | 34 | 212 | 103 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000003 | 34 | 212 | 103 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000003 | 34 | 212 | 103 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.0000003 | 34 | 212 | 103 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 198 | 33 | 223 | 0 |
| CV536895 | 177 | 102 | 273 | 0 |
| EY474520 | 255 | 23 | 270 | 0 |
| GT141262 | 231 | 47 | 270 | 0 |
| CV537970 | 156 | 123 | 273 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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