Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g01050.1 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50994.8 Isoelectric Point: 5.9119 |
Chromosome | Chromosome/Scaffold: 02 Start: 785559 End: 790594 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 408 | 0 |
ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVVITGNNGTIDGQGSIWWNNFWNK TLNYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTIIAPLSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPST NINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTYDPDALPVIERITIK DVIGVKVKHAGLIQGIKGDNFVNICLSNITLNVSSK |
Full Sequence |
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Protein Sequence Length: 465 Download |
MKRLSTLVDV FLVLALFSCS TWTVWSSSCC NQINLNEVRP HSVSITEFGA VGDGITLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGRWLTG SFDLISHLTL WLDNDAVILG STNSDDWPVV 120 DPLPSYGRGR ELPGGRHRSL IYGCNLTDVV ITGNNGTIDG QGSIWWNNFW NKTLNYTRPH 180 LVELMNSTGV LISNVTFLNS PFWTIHPVYC SHVTIQNVTI IAPLSSPNTD GINPDSSDNV 240 CIEDCYISTG DDLISIKSGW DGYGISFGRP STNINIRRLI GKTTSAGIAI GSEMSGGVSE 300 VHAEDIYIFD SHSAIRIKTS PGRGGYVRNV YISNMILANV DIAIRFTGLY GEHPDDTYDP 360 DALPVIERIT IKDVIGVKVK HAGLIQGIKG DNFVNICLSN ITLNVSSKLP WNCSYIKGFS 420 DLVSPEACEP LKERIFPEHC SDCYYLPNHL KSLSNQNWGA WLLS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-23 | 41 | 340 | 315 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 7.0e-24 | 1 | 340 | 356 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-29 | 41 | 384 | 356 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-30 | 141 | 417 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-64 | 43 | 340 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 0 | 1 | 459 | 1 | 459 | unknown [Glycine max] |
EMBL | CBI37055.1 | 0 | 1 | 464 | 1 | 465 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 464 | 68 | 516 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 444 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 17 | 464 | 27 | 475 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 26 | 404 | 11 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 26 | 404 | 11 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 26 | 404 | 11 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 26 | 404 | 11 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-18 | 87 | 403 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |