y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g01230.1 |
Family | GH28 |
Protein Properties | Length: 474 Molecular Weight: 51386.9 Isoelectric Point: 6.5396 |
Chromosome | Chromosome/Scaffold: 02 Start: 913656 End: 916349 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 428 | 0 |
ACESESPVKVILVPQGFSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPNGTTS PGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGCHDVDIKNITCGP GHGISIGSLGNHNSRACVSNITVRDSVIKVADNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVTDIVYTNIKGTYDIR HPPMRFACSDSVPCTNLTLSDIELLP |
Full Sequence |
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Protein Sequence Length: 474 Download |
MRHSHILTLA LSLYFLALFL PTQARHHYHK KHKHSYYHNA PEISPSPAPA PSNAPDDASS 60 PSPSGNENYH NASSNLFDVR TFGAIGDGIT DDTESFKMAW DTACESESPV KVILVPQGFS 120 FVIQSTIFTG PCKGGLVLKV DGTLMPPDGP ESWPKNNSKR QWLVFYRING MSLEGSGLID 180 GRGAKWWDLP CKPHKGPNGT TSPGPCDSPV AIRFFMSSNL TVQGLRIKNS PQFHFRFDGC 240 ESVHVESIYI TAPALSPNTD GIHIENTNDV RIYNSVISNG DDCVSIGAGC HDVDIKNITC 300 GPGHGISIGS LGNHNSRACV SNITVRDSVI KVADNGVRIK TWQGGSGSVS GVTFSNIHME 360 SVRNPIIIDQ FYCLSKDCSN KTSAVFVTDI VYTNIKGTYD IRHPPMRFAC SDSVPCTNLT 420 LSDIELLPAQ GNIVLDPFCW SAYGNSETLT IPPVFCMLEG LPQSISGNDI DHC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-77 | 73 | 457 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 7.0e-82 | 65 | 453 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-84 | 104 | 426 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-94 | 79 | 426 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-117 | 73 | 453 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 73 | 473 | 85 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 73 | 473 | 66 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 42 | 473 | 43 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 73 | 473 | 39 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 66 | 473 | 131 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-25 | 171 | 426 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-25 | 171 | 426 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-25 | 171 | 426 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-25 | 171 | 426 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-25 | 171 | 426 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |