| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma02g01910.1 |
| Family | GH28 |
| Protein Properties | Length: 534 Molecular Weight: 58031 Isoelectric Point: 5.6529 |
| Chromosome | Chromosome/Scaffold: 02 Start: 1381401 End: 1385719 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 147 | 495 | 0 |
| FADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAMDPLPSYGRGIDVPVGRYRSLIYGQNLSDVVITGDNGIIDGQGSVWWDLIST HSLNYSRPHIIELVGSDNIIISNLTFLNSPAWSIHPVYCSNIQIQKITVQAPTKFPYTSGIVPDSSEHVCIDNCNISTGHDAIVLKSGWDEYGVAYGKPT SNVHIRGVYLQSSSGAGLAFGSEMSGGISDIIAEQLHITNSTFGIELKTTRGRGGYMKNIFISDAKLENIYLGISMTGSSGSHPDDKYDPNAVPDVGNVT FENVIGANIAIAGNFSGIVDSPFTPICLSNVTFSTSSESSPSWFCSNVM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 534 Download |
| MKCGAGIFLY SRRFLLPPPV CFYCFQYLLG IIYEIALALF LLCCPYVLLL VLLPSSSLLF 60 HHCFQSFLFL FEEEGHRPMK RLVTVLLLII LSTALEGNGE DDHEPCKEKV LDPRPHSVSI 120 LEFGAVGDGK TLNTVAFQNA VFYAKSFADK GGAKLYVPSG KWLTGSFNLT SHLTLFLERG 180 ATIIASQDYA HWTAMDPLPS YGRGIDVPVG RYRSLIYGQN LSDVVITGDN GIIDGQGSVW 240 WDLISTHSLN YSRPHIIELV GSDNIIISNL TFLNSPAWSI HPVYCSNIQI QKITVQAPTK 300 FPYTSGIVPD SSEHVCIDNC NISTGHDAIV LKSGWDEYGV AYGKPTSNVH IRGVYLQSSS 360 GAGLAFGSEM SGGISDIIAE QLHITNSTFG IELKTTRGRG GYMKNIFISD AKLENIYLGI 420 SMTGSSGSHP DDKYDPNAVP DVGNVTFENV IGANIAIAGN FSGIVDSPFT PICLSNVTFS 480 TSSESSPSWF CSNVMGISKE VFPEPCPDLQ NTYSNFSSCF SSLHPSSSFV SSA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-19 | 114 | 416 | 318 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-24 | 116 | 454 | 352 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 6.0e-25 | 115 | 462 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-27 | 216 | 452 | 245 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-56 | 118 | 465 | 373 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 92 | 507 | 12 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 92 | 521 | 35 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 65 | 521 | 73 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 79 | 507 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 96 | 533 | 21 | 452 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-38 | 116 | 483 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-38 | 116 | 483 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-38 | 116 | 483 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-38 | 116 | 483 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-17 | 162 | 450 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
