| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma02g01980.1 |
| Family | GH28 |
| Protein Properties | Length: 417 Molecular Weight: 43620.3 Isoelectric Point: 6.6872 |
| Chromosome | Chromosome/Scaffold: 02 Start: 1445856 End: 1448926 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 405 | 0 |
| GEACKNSTTQAKVLIPAGTFRAAQTMFAGPCTSPKPIIVEVIGTVKANTDPSEYVTPEWFSFLDIDGLVLTGNGVFDGQGAASWPYNDCAKTKGDCAPLP ASLKFAKVNNSIVTDITSLNSMQFHFHIHGCSNFSLSNINITAPGNSPNTDGMHISSSDSIKVFDSVIGTGDDCISIGHSTTNIAITNITCGPGHGISVG SLGKRPEERSVNGISVTNCTFVNTTNGARIKTWMGTVPAEATNITYEGLIMKGVQNPIIIDQSYGSNKKTTPSTSVWKISNIHFRKIQGTTVSNIAVSLQ CSTSNPCEGVEIADVDLAYSGGPHNTTFVSSCSNAKA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 417 Download |
| MATARALFLL GAALLSCTLI GASSRGVENR RSLLLPVPNN GPAIFDVTKF GAVADDQTDN 60 IDAFRAAWGE ACKNSTTQAK VLIPAGTFRA AQTMFAGPCT SPKPIIVEVI GTVKANTDPS 120 EYVTPEWFSF LDIDGLVLTG NGVFDGQGAA SWPYNDCAKT KGDCAPLPAS LKFAKVNNSI 180 VTDITSLNSM QFHFHIHGCS NFSLSNINIT APGNSPNTDG MHISSSDSIK VFDSVIGTGD 240 DCISIGHSTT NIAITNITCG PGHGISVGSL GKRPEERSVN GISVTNCTFV NTTNGARIKT 300 WMGTVPAEAT NITYEGLIMK GVQNPIIIDQ SYGSNKKTTP STSVWKISNI HFRKIQGTTV 360 SNIAVSLQCS TSNPCEGVEI ADVDLAYSGG PHNTTFVSSC SNAKAVFGGI LNPPAC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-77 | 34 | 416 | 388 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-78 | 42 | 413 | 377 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-81 | 34 | 416 | 397 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-95 | 75 | 404 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-123 | 37 | 416 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36886.1 | 0 | 4 | 416 | 9 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 4 | 416 | 9 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 1 | 416 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301488.1 | 0 | 61 | 416 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301489.1 | 0 | 1 | 416 | 1 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 3e-17 | 143 | 361 | 80 | 307 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 7e-17 | 138 | 359 | 113 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000005 | 143 | 358 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000005 | 143 | 358 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000005 | 143 | 358 | 79 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
