Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g02460.1 |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 50354.3 Isoelectric Point: 8.9781 |
Chromosome | Chromosome/Scaffold: 02 Start: 1848249 End: 1851481 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 365 | 0 |
IIFAHSMKIRLNQELIMASDKTIDGRGVDVYLAGGAGITIQFIKNVIIHGVKIFDIQVGNGGLIIDSENHYGLRTMSDGDGISIFGSSNIWIDHVSMRKC KDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYDGDTIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MAKMHNFFLL TCLIVIIPTL HANVKEDEIY WKRQSQILND SYWKQKASVA EKENKQAYTS 60 DPYSLTKNLT YSVSEIIVGE QNGRRNLKGK GGNCMATNPI DRCWRCDPNW ANNRKKLANC 120 VQGFGRNTVG GKNGPFYVVT SNLDNDMVNP VPGTLRHAVT RTGPLWIIFA HSMKIRLNQE 180 LIMASDKTID GRGVDVYLAG GAGITIQFIK NVIIHGVKIF DIQVGNGGLI IDSENHYGLR 240 TMSDGDGISI FGSSNIWIDH VSMRKCKDGL IDAIQGSTAI TISNSHFTDH NEVMLFGASD 300 SYDGDTIMQI TLAFNHFGKR LVQRMPRCRY GFVHVVNNDY THWEMYAIGG SKHPTIISEG 360 NRFIAPDNIN AKEITKREYS PEQEWKSWQW RSINDEYLNG GFFREGGAQL TDRPYSRHDM 420 MTARPGSYVG RLTRYAGSLK CMVGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-5 | 40 | 73 | 34 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-28 | 119 | 440 | 353 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-55 | 179 | 363 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-65 | 173 | 367 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 15 | 447 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 15 | 447 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 15 | 447 | 19 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 9 | 447 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 447 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 98 | 437 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 98 | 437 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 155 | 365 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 163 | 376 | 109 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000004 | 246 | 375 | 205 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |