y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g04230.1 |
Family | GH28 |
Protein Properties | Length: 463 Molecular Weight: 50863.3 Isoelectric Point: 8.938 |
Chromosome | Chromosome/Scaffold: 02 Start: 3411420 End: 3414779 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 90 | 426 | 0 |
GACKVAAATVKIPAQFKFLMKPVTLQGPCMPDLTLQIDGTLLAPSEASSWPQSSLFQWINFKWVQNFTIIGSGTVDGQGYNWWSSSEFYDMQKTYSKHIP SIKPTAIRFYSSNFVTVRDIRIINSPLCHLKFDNSKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQRSIISTGDDCVSIQTGCSNVHVHHINCGPGHG ISLGGLGKDKTSAACVSDITVEDISMKNTLFGARIKTWQGGIGMVKNVTFSRIQVYDVMYPIMIDQYYCDKEICKNHTSTVVISGVKFDQIHGTYGMQPV HLACSNSIPCTDVDLSDIQLSPSPKYRGLQQAVCWNS |
Full Sequence |
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Protein Sequence Length: 463 Download |
MKRSRSFSLL FYLYLLVIVF ATFSIVSMEA RKTNIKKKLH KRHKGGHTRG SHSPCPVPAP 60 QGSTFDVLAF GAKGNGVSDD SEALLAAWNG ACKVAAATVK IPAQFKFLMK PVTLQGPCMP 120 DLTLQIDGTL LAPSEASSWP QSSLFQWINF KWVQNFTIIG SGTVDGQGYN WWSSSEFYDM 180 QKTYSKHIPS IKPTAIRFYS SNFVTVRDIR IINSPLCHLK FDNSKGIKVN NITISSPENS 240 PNTDGIHLQN TQDVEIQRSI ISTGDDCVSI QTGCSNVHVH HINCGPGHGI SLGGLGKDKT 300 SAACVSDITV EDISMKNTLF GARIKTWQGG IGMVKNVTFS RIQVYDVMYP IMIDQYYCDK 360 EICKNHTSTV VISGVKFDQI HGTYGMQPVH LACSNSIPCT DVDLSDIQLS PSPKYRGLQQ 420 AVCWNSYGKS QGPLIPSSID YCLRSGGGLI KRIARSHDRV CY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-67 | 64 | 436 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-69 | 62 | 410 | 354 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-72 | 63 | 436 | 378 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-73 | 94 | 415 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-92 | 70 | 457 | 395 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 461 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 60 | 461 | 77 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 29 | 461 | 34 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 65 | 450 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 461 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-24 | 155 | 361 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-19 | 50 | 444 | 4 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 9e-16 | 164 | 410 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-16 | 164 | 410 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-16 | 164 | 410 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |