Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g31540.1 |
Family | GH28 |
Protein Properties | Length: 429 Molecular Weight: 45846.4 Isoelectric Point: 4.7151 |
Chromosome | Chromosome/Scaffold: 02 Start: 34605203 End: 34609352 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 416 | 0 |
ACSSGGAVLLVPENNYLLKPFRFSGPCRSNIEVQISGTIEASENLSDYSEDLTHWLTFDSVEKLSVKGGGTIHGNGNIWWQNSCKVNEKLPCKDAPTALT FYKCNDLTVEDLTIKNGQKMQVSFQDSENVKVSGLTVTAPGDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSKDVLATDIICGPGHGISIGSLGA GGSKDFVSGITVKGAMLSGTTNGLRIKTWQGGSGSASNIQFQNIQMDNVTNPIIIDQNYCDQETPCEEQKSAVQIRNVMYQNIKGTSASDVGVQFDCSNN FPCQGIVLQNIDLQLEGGGGAKASCNSVE |
Full Sequence |
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Protein Sequence Length: 429 Download |
MALQRHHLSL LFIMFSFVAC HSTVLFDDGS TFKDFIKQKS TDVLSLKKFV KLGDISSSLK 60 TVNVNDYGAR GDGKTDDTQA FNDAWEVACS SGGAVLLVPE NNYLLKPFRF SGPCRSNIEV 120 QISGTIEASE NLSDYSEDLT HWLTFDSVEK LSVKGGGTIH GNGNIWWQNS CKVNEKLPCK 180 DAPTALTFYK CNDLTVEDLT IKNGQKMQVS FQDSENVKVS GLTVTAPGDS PNTDGIHVTN 240 TQNIQISSSV IGTGDDCISI VSGSKDVLAT DIICGPGHGI SIGSLGAGGS KDFVSGITVK 300 GAMLSGTTNG LRIKTWQGGS GSASNIQFQN IQMDNVTNPI IIDQNYCDQE TPCEEQKSAV 360 QIRNVMYQNI KGTSASDVGV QFDCSNNFPC QGIVLQNIDL QLEGGGGAKA SCNSVELSYR 420 GDVIPLCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-77 | 63 | 416 | 359 | + polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-103 | 57 | 425 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-108 | 89 | 418 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-134 | 57 | 425 | 373 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-152 | 10 | 427 | 428 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL30418.1 | 0 | 1 | 428 | 1 | 428 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
GenBank | ACJ06506.1 | 0 | 1 | 428 | 4 | 441 | polygalacturonase [Diospyros kaki] |
EMBL | CBI29907.1 | 0 | 1 | 427 | 1 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002308956.1 | 0 | 21 | 428 | 37 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 26 | 428 | 72 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 142 | 350 | 102 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 2e-21 | 60 | 373 | 26 | 384 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-21 | 60 | 373 | 26 | 384 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-21 | 60 | 373 | 26 | 384 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-21 | 60 | 373 | 26 | 384 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |