| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma02g38050.1 |
| Family | PL4 |
| Protein Properties | Length: 652 Molecular Weight: 74152.6 Isoelectric Point: 4.6508 |
| Chromosome | Chromosome/Scaffold: 02 Start: 43379349 End: 43385889 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 2 | 623 | 0 |
| ASQAVQLRVEDSQVVMDNGILQVYLSNPGGFVTGIQYNGIDNLLETLNEKDNRGYWDVVWSEAGSTGTTGTFERIVGTSFNVIMENEEQVEISFTRKWDP SLKGKRAPLNIDKRYVMLRNSAGFYSYAIFEHLQEWPAFNIPQIRIVYKLRKDKFHYMAVSDDRQRFMPLPDDRLPGRGKELVPPEAVLLVNPVEPDFKG EVDDKYQYSSENKDLMVHGWISSQSEDDPAMGLWVILPSNEFRSGGLLKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNSLLN GDDPLELWEDAKNQMKEEVQSWPYDFPASEDFQKSSQRGSLCGTLLVRDRCVSDENIIAEGAYVGLATPGEAGSWQRECKGYQFWTRANEEGYFSIDNIR SGDYNLYAWVPGFIGEYWNNVVLTITPGCEINLGDIIFEPPRDGPTLWEIGIPDRSAAGFYVPDPNPKYINKLFVNHPDNKFRQYGLWERYAELYPNEDL IYTVGVSDYTKDWFFAHVPRKQEDGSYQGTTWQIKFNLDDVEASNIYRLRLALASANISELQVRVNDPKQDPPLFTTGVIGKDNAIARHGIHGLYWLFSI DVPGLLLEKSVNIIFLTQTMAS | |||
| Full Sequence |
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| Protein Sequence Length: 652 Download |
| MASQAVQLRV EDSQVVMDNG ILQVYLSNPG GFVTGIQYNG IDNLLETLNE KDNRGYWDVV 60 WSEAGSTGTT GTFERIVGTS FNVIMENEEQ VEISFTRKWD PSLKGKRAPL NIDKRYVMLR 120 NSAGFYSYAI FEHLQEWPAF NIPQIRIVYK LRKDKFHYMA VSDDRQRFMP LPDDRLPGRG 180 KELVPPEAVL LVNPVEPDFK GEVDDKYQYS SENKDLMVHG WISSQSEDDP AMGLWVILPS 240 NEFRSGGLLK QNLTSHVGPI SLAMFLSAHY AGEDIVLKLQ PNEPWKKVFG PTFVYLNSLL 300 NGDDPLELWE DAKNQMKEEV QSWPYDFPAS EDFQKSSQRG SLCGTLLVRD RCVSDENIIA 360 EGAYVGLATP GEAGSWQREC KGYQFWTRAN EEGYFSIDNI RSGDYNLYAW VPGFIGEYWN 420 NVVLTITPGC EINLGDIIFE PPRDGPTLWE IGIPDRSAAG FYVPDPNPKY INKLFVNHPD 480 NKFRQYGLWE RYAELYPNED LIYTVGVSDY TKDWFFAHVP RKQEDGSYQG TTWQIKFNLD 540 DVEASNIYRL RLALASANIS ELQVRVNDPK QDPPLFTTGV IGKDNAIARH GIHGLYWLFS 600 IDVPGLLLEK SVNIIFLTQT MASGPLALFQ GIMYDYIRLE GPNPFPHQKI H* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.009 | 387 | 426 | 40 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 4.0e-33 | 338 | 437 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 4.0e-50 | 449 | 640 | 194 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-76 | 8 | 305 | 301 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 6.0e-98 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 1 | 642 | 1 | 644 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 17 | 641 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301114.1 | 0 | 1 | 644 | 1 | 633 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527353.1 | 0 | 1 | 650 | 1 | 641 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 1 | 642 | 1 | 634 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY293973 | 356 | 1 | 353 | 0 |
| DW479599 | 299 | 1 | 299 | 0 |
| DT552229 | 297 | 17 | 312 | 0 |
| DW479600 | 299 | 1 | 299 | 0 |
| FC896579 | 288 | 69 | 353 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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