| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma02g38980.2 |
| Family | GH28 |
| Protein Properties | Length: 302 Molecular Weight: 33259.6 Isoelectric Point: 9.0153 |
| Chromosome | Chromosome/Scaffold: 02 Start: 44292308 End: 44293959 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 87 | 290 | 0 |
| FGFGFVNNLIIMDITLKDSKYFHVNIFGCKNITFTNFRVSSTTYNPNTDRIHIGKLTQVKITNSQIGTGDDCISLGDGSKEVTILNVTCGPEHGISVGSL EKYSNEDSVEDLIVKNCTLKNTNNGLRIKTWPILPWNQCSKQSPSKIKISKVTFKNIRGTSATQERITLICSSGVPCETVELSDINLRFNDIILATAKCA NVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 302 Download |
| MSFSWSMTTL ALLLLLASYV KVQANLFDIR KYGVVPNLDI TMALQKAWTH ACASMTTSKI 60 VIPNGKYKLR QIDFMGPCKA PIEVQNFGFG FVNNLIIMDI TLKDSKYFHV NIFGCKNITF 120 TNFRVSSTTY NPNTDRIHIG KLTQVKITNS QIGTGDDCIS LGDGSKEVTI LNVTCGPEHG 180 ISVGSLEKYS NEDSVEDLIV KNCTLKNTNN GLRIKTWPIL PWNQCSKQSP SKIKISKVTF 240 KNIRGTSATQ ERITLICSSG VPCETVELSD INLRFNDIIL ATAKCANVKP NFEGKAPICA 300 T* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-6 | 39 | 85 | 48 | + Probable polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-37 | 71 | 273 | 232 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-39 | 24 | 287 | 353 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-54 | 77 | 289 | 241 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-62 | 26 | 294 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 17 | 294 | 20 | 386 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 4 | 294 | 7 | 386 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 4 | 294 | 7 | 386 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 20 | 294 | 23 | 386 | polygalacturonase [Salix gilgiana] |
| EMBL | CAA72003.1 | 0 | 1 | 301 | 1 | 391 | polygalacturonase [Medicago sativa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.00000004 | 133 | 289 | 153 | 313 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00000004 | 133 | 289 | 153 | 313 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00000004 | 133 | 289 | 153 | 313 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.00000004 | 133 | 289 | 153 | 313 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.00000004 | 133 | 289 | 153 | 313 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
