y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g47720.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41941.2 Isoelectric Point: 7.9381 |
Chromosome | Chromosome/Scaffold: 02 Start: 51225395 End: 51226940 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 378 | 0 |
KVACASTSASKILIPNGTYKMKAVDVKGPCMAPIEIQIDGTIQAPADPNALDGAKQWVKIGYANFITLSGKGIFDGQGAIAWKQNDCRTNTNCKIPSMNF GFNFVNHSMVRGITSKDSKSFHVILFGCYNFTFDGFHISAPETSINTDGIHIGKSTDVKILNTNIATGDDCVSLGDGSIHVTVQNVNCGPGHGISVGSLG KYTNEEPVKDLLVKNCTLTNTENGVRIKTWPNSSQTYLVTDMHFEDITMVDVLNPVIIDQEYCPWNHCPKQSPSKIKIRKVSFSDIKGTSKSKEGVIFIC SKAVPCEDVELNNVALTFKGDPIVAKCANVRP |
Full Sequence |
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Protein Sequence Length: 390 Download |
MKLNIPPIVL YLVLTISGTA QSVGIDIKKF GGIPDADITQ AFTDAWKVAC ASTSASKILI 60 PNGTYKMKAV DVKGPCMAPI EIQIDGTIQA PADPNALDGA KQWVKIGYAN FITLSGKGIF 120 DGQGAIAWKQ NDCRTNTNCK IPSMNFGFNF VNHSMVRGIT SKDSKSFHVI LFGCYNFTFD 180 GFHISAPETS INTDGIHIGK STDVKILNTN IATGDDCVSL GDGSIHVTVQ NVNCGPGHGI 240 SVGSLGKYTN EEPVKDLLVK NCTLTNTENG VRIKTWPNSS QTYLVTDMHF EDITMVDVLN 300 PVIIDQEYCP WNHCPKQSPS KIKIRKVSFS DIKGTSKSKE GVIFICSKAV PCEDVELNNV 360 ALTFKGDPIV AKCANVRPKF AGKAPPCTA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-65 | 25 | 388 | 371 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-77 | 3 | 388 | 391 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-82 | 27 | 362 | 344 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-103 | 50 | 376 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-119 | 8 | 388 | 393 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 389 | 1 | 393 | polygalactorunase PG11 precursor [Medicago sativa] |
EMBL | CAA72003.1 | 0 | 2 | 388 | 4 | 390 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 1 | 338 | 3 | 340 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 1 | 389 | 1 | 393 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002329175.1 | 0 | 10 | 382 | 15 | 386 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-17 | 192 | 384 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 192 | 384 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-17 | 192 | 384 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-17 | 192 | 384 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-17 | 192 | 384 | 153 | 338 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |