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Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma03g23680.2 |
Family | GH28 |
Protein Properties | Length: 354 Molecular Weight: 37476.2 Isoelectric Point: 4.794 |
Chromosome | Chromosome/Scaffold: 03 Start: 30237172 End: 30240945 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 340 | 0 |
QSMCEAQGTSTLLIPPNKVFLLQGVIVAPTKDAWVEGNLNTLIMISNVNGLTIDGSGGLIDGYGSAWWACKSCPRPSVLIINSCNSVSVTNLNMINSPKS HIHVNGCEGATFSHINISAPGDSPNTDGFDISTSKNIMIEDSTIATGDDCIAISGGSSYINVTGIACGPGHGISIGSLGKKFDTVQEVYVRNCSFIRTTN GARIKTFPNGMGYAKQITFEDITLEQTRNPIIIDQEYRDLTNQAVEVSDVTYRGIHGTSLDGRAITLDCGESGCYGIVLDQINIVSCLTGKSASCFCNNA HGT |
Full Sequence |
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Protein Sequence Length: 354 Download |
MTCRWNVGTQ NTIYNVIDFG AVGDGKTDDT QAFLKAWQSM CEAQGTSTLL IPPNKVFLLQ 60 GVIVAPTKDA WVEGNLNTLI MISNVNGLTI DGSGGLIDGY GSAWWACKSC PRPSVLIINS 120 CNSVSVTNLN MINSPKSHIH VNGCEGATFS HINISAPGDS PNTDGFDIST SKNIMIEDST 180 IATGDDCIAI SGGSSYINVT GIACGPGHGI SIGSLGKKFD TVQEVYVRNC SFIRTTNGAR 240 IKTFPNGMGY AKQITFEDIT LEQTRNPIII DQEYRDLTNQ AVEVSDVTYR GIHGTSLDGR 300 AITLDCGESG CYGIVLDQIN IVSCLTGKSA SCFCNNAHGT ATATNPNCTC LLP* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-71 | 8 | 337 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-76 | 12 | 349 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-82 | 13 | 342 | 365 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-91 | 9 | 351 | 374 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-94 | 13 | 345 | 362 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 14 | 351 | 30 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 14 | 351 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABD28723.1 | 0 | 12 | 352 | 14 | 391 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 5 | 351 | 18 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 8 | 351 | 22 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-27 | 94 | 336 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-27 | 94 | 336 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-27 | 94 | 336 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-27 | 94 | 336 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-27 | 94 | 336 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 255 | 61 | 306 | 0 |
GO025017 | 203 | 153 | 352 | 0 |
CX192293 | 222 | 57 | 276 | 0 |
GO013888 | 223 | 135 | 350 | 0 |
CA908616 | 186 | 8 | 175 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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