| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g23701.1 |
| Family | GH28 |
| Protein Properties | Length: 356 Molecular Weight: 37312.5 Isoelectric Point: 5.8507 |
| Chromosome | Chromosome/Scaffold: 03 Start: 30285974 End: 30289300 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 279 | 0 |
| WQSMCEAQGTSTLLIPPNKVFLVTSMLLKGPCVAPSVQIQLQGVIVAPTKDAWVEGNLNTLIMISNVNGLTIDGSGGLIDGYGSAWWACKSCPRPSVLII NSCNSVSVTNLNMINSPKSHIHVNGCEGATFSHINISAPGDSPNTDGFDISTSKNIMIEDSTIATGDDCIAISGGSSYINVTGIACGPGHGISIGSLGKK FDTVQEVYVRNCSFIRTTNGARIKTF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 356 Download |
| MQSLITCVLI IAFISPCLCH RWNVGTQNTI YNVIDFGAVG DGKTDDTQAF LKAWQSMCEA 60 QGTSTLLIPP NKVFLVTSML LKGPCVAPSV QIQLQGVIVA PTKDAWVEGN LNTLIMISNV 120 NGLTIDGSGG LIDGYGSAWW ACKSCPRPSV LIINSCNSVS VTNLNMINSP KSHIHVNGCE 180 GATFSHINIS APGDSPNTDG FDISTSKNIM IEDSTIATGD DCIAISGGSS YINVTGIACG 240 PGHGISIGSL GKKFDTVQEV YVRNCSFIRT TNGARIKTFP NQAVEVSDVT YRGIHGTSLD 300 GRAITLDCGE SGCYGIVLDQ INIVSCLTGK SASCFCNNAH GTATATNPNC TCLLP* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-59 | 25 | 339 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-65 | 29 | 351 | 376 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-69 | 30 | 344 | 366 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-77 | 26 | 353 | 374 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 1.0e-82 | 30 | 347 | 362 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 353 | 1 | 396 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 1 | 353 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABD28723.1 | 0 | 29 | 354 | 14 | 391 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | XP_002324855.1 | 0 | 1 | 353 | 1 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 353 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-23 | 129 | 295 | 77 | 250 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-23 | 129 | 295 | 77 | 250 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-23 | 129 | 295 | 77 | 250 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-23 | 129 | 295 | 77 | 250 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-23 | 129 | 295 | 77 | 250 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
