y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma03g24030.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 41316 Isoelectric Point: 7.0707 |
Chromosome | Chromosome/Scaffold: 03 Start: 30708189 End: 30710851 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 377 | 0 |
GRACSSTAPTTIYVPLGRFLVGKVVFKGRCNNKGITIRIDGAMLAPSNYDVIGNGGNWLFFDDVDGVSIIGGVLDGQGTGLWACKRSGKTCPTGATNLGF TNSNNIVINGVTSLNSQMFHIVIDRCNNVKLQGIKVSAAGNSPNTDGIHVQLSSTVTILNSNIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKE FQEPGVQNVTVKTMTFTGTENGVRIKSWGRPSNGFARNILFQHATMVNVQNPIVIDQNYCPHEKNCPGQVSGVEVSNVIYQDIYGTSATEIAVKINCSPK YPCIGISLEDVMLTYESKQAVASCNHA |
Full Sequence |
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Protein Sequence Length: 392 Download |
MARIVLLHAL VLFLFTFTSA IAEAVTLNVV NFGAKPDGET DSTNAFVSAW GRACSSTAPT 60 TIYVPLGRFL VGKVVFKGRC NNKGITIRID GAMLAPSNYD VIGNGGNWLF FDDVDGVSII 120 GGVLDGQGTG LWACKRSGKT CPTGATNLGF TNSNNIVING VTSLNSQMFH IVIDRCNNVK 180 LQGIKVSAAG NSPNTDGIHV QLSSTVTILN SNIATGDDCI SIGPGTTNLW IENIACGPGH 240 GISVGSLGKE FQEPGVQNVT VKTMTFTGTE NGVRIKSWGR PSNGFARNIL FQHATMVNVQ 300 NPIVIDQNYC PHEKNCPGQV SGVEVSNVIY QDIYGTSATE IAVKINCSPK YPCIGISLED 360 VMLTYESKQA VASCNHAGGI TSGVVQPNNC F* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-83 | 54 | 377 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-92 | 27 | 391 | 373 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-97 | 11 | 387 | 385 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 8.0e-107 | 3 | 390 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-136 | 1 | 391 | 393 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 3 | 391 | 4 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 3 | 391 | 4 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAF42034.1 | 0 | 7 | 391 | 14 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 7 | 391 | 14 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 10 | 391 | 12 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-21 | 153 | 375 | 159 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.000000000000008 | 26 | 367 | 20 | 342 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.00000000002 | 121 | 336 | 81 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.00000000002 | 121 | 336 | 81 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.00000000002 | 121 | 336 | 81 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |