Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma03g29420.2 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 51234 Isoelectric Point: 7.3035 |
Chromosome | Chromosome/Scaffold: 03 Start: 37405806 End: 37409004 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 98 | 432 | 0 |
VVCSSGEAILVVPQANYLLKPIRFSGPCEPNVEVQISGTLEASDDPSDYEDDRRHWLVFDNVKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTAL TFYNCEDLTVENLSIENAQQIHVSFQDSVNIKVSGLTVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSKDVEATDITCGPGHGISIGSLG SGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIGMDNVTNPIIINQNYCDKKKKPCKKMLSKKSAIQIKNVLYQNIRGTSASDIAVKF DCSDKFPCEEIVLQNIDLECEEGDDAEAMCNNVEL |
Full Sequence |
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Protein Sequence Length: 465 Download |
MALLKHLLLS FTIIIISFVA CYSTLQEDPP SSIIYIDHSP SIDDGRTFKN LIKQSTNVLS 60 LNRFDKRSSL KKLSVNDYGA KGNGDADDTE AFKKAWDVVC SSGEAILVVP QANYLLKPIR 120 FSGPCEPNVE VQISGTLEAS DDPSDYEDDR RHWLVFDNVK KLFVYGGGTI DGNGKIWWKN 180 SCKRNKKRPC KDAPTALTFY NCEDLTVENL SIENAQQIHV SFQDSVNIKV SGLTVTAPED 240 SPNTDGIHVT NTQNIQISSS VIGTGDDCIS IVHGSKDVEA TDITCGPGHG ISIGSLGSGK 300 SKEFVSGIRV NRAKIFGTKN GVRIKTWQGG SGSASDIQFQ NIGMDNVTNP IIINQNYCDK 360 KKKPCKKMLS KKSAIQIKNV LYQNIRGTSA SDIAVKFDCS DKFPCEEIVL QNIDLECEEG 420 DDAEAMCNNV ELSYLGNVRP RCNSKKRKAF TTITSIWKYF SWYI* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03003 | PLN03003 | 1.0e-72 | 68 | 430 | 369 | + Probable polygalacturonase At3g15720 |
PLN02188 | PLN02188 | 2.0e-93 | 66 | 441 | 381 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 2.0e-105 | 100 | 433 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 4.0e-123 | 67 | 440 | 378 | + Probable polygalacturonase |
PLN02218 | PLN02218 | 3.0e-137 | 50 | 443 | 400 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL30418.1 | 0 | 1 | 442 | 1 | 427 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
EMBL | CBI29907.1 | 0 | 1 | 442 | 1 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282759.1 | 0 | 4 | 442 | 3 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308956.1 | 0 | 13 | 442 | 1 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 35 | 442 | 65 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 164 | 361 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-20 | 167 | 430 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-20 | 167 | 430 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-20 | 167 | 430 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-20 | 167 | 430 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |