| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g29431.1 |
| Family | GH28 |
| Protein Properties | Length: 293 Molecular Weight: 32525.1 Isoelectric Point: 7.1836 |
| Chromosome | Chromosome/Scaffold: 03 Start: 37412313 End: 37417095 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 123 | 252 | 2.3e-29 |
| RNVEATDNTCGPGHGIRFLEGVIRIKTWQGGSGSASNIQFQNIEMDNVTNPIIINQNYCDHKKRPCKTQHLEKSAIQINVLYQNITGTSTSDVAVKLACS ENFPCQEIVLQNINLECEGDAAYAICNNVE | |||
| Full Sequence |
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| Protein Sequence Length: 293 Download |
| MALLKHLISF TIIIISFVAC YSTLQENPPS SIYAFNKAWQ VVCSTGEAIL VVPQGNYLLK 60 PIRFSGPCKP NFAVQISGTL EASDDPSDYS GDNRHWLVFD NIQKLFVYGG GTINGNGNIS 120 IYRNVEATDN TCGPGHGIRF LEGVIRIKTW QGGSGSASNI QFQNIEMDNV TNPIIINQNY 180 CDHKKRPCKT QHLEKSAIQI NVLYQNITGT STSDVAVKLA CSENFPCQEI VLQNINLECE 240 GDAAYAICNN VELSYLGHVN PRCKSQREIK QKHLLLPPYM ERLLIQGHMH VY* 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-8 | 43 | 103 | 62 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-15 | 34 | 107 | 76 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-33 | 132 | 272 | 170 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-37 | 123 | 254 | 157 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-42 | 123 | 263 | 166 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71154.1 | 9.94922e-44 | 123 | 268 | 1 | 168 | AF152752_1 polygalacturonase A [Actinidia chinensis] |
| GenBank | AAF71155.1 | 9.94922e-44 | 123 | 268 | 1 | 168 | AF152753_1 polygalacturonase A [Actinidia chinensis] |
| GenBank | AAF71156.1 | 5.04467e-44 | 123 | 263 | 1 | 163 | AF152754_1 polygalacturonase B [Actinidia chinensis] |
| GenBank | AAL30418.1 | 1e-30 | 1 | 119 | 1 | 165 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
| GenBank | AAL30418.1 | 0 | 119 | 263 | 261 | 427 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 20 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DV152812 | 166 | 123 | 265 | 0 |
| CK318807 | 165 | 125 | 263 | 1.96182e-44 |
| DY665744 | 167 | 123 | 263 | 2.94273e-44 |
| EH767961 | 167 | 123 | 263 | 9.94922e-44 |
| EH785260 | 167 | 123 | 263 | 2.00386e-43 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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