| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g35610.2 |
| Family | GT41 |
| Protein Properties | Length: 920 Molecular Weight: 102181 Isoelectric Point: 5.6506 |
| Chromosome | Chromosome/Scaffold: 03 Start: 42759192 End: 42772888 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT41 | 373 | 844 | 0 |
| QGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYPQYTSWDN SKDPERPLVIGYVSPDYFTHSVSYFIETPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVLNKGGIWKDIYGIDEKRVANMVREDQVDILVELTGHTASN KLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPICPTPALSNGFVTFGSFNNLAKITPKVLQVWA RILCAIPNSRLVVKCKPFCSDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS LLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRKMWHRYCRG | |||
| Full Sequence |
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| Protein Sequence Length: 920 Download |
| MAGADINSDG NGSERELAGN SYNGFAEAPE ASVSASGCEG NDSVSYANVL RSRNKFVDAL 60 SIYERVLESD GANVEALIGK GICLQMQNKG RLAYESFSEA IKVDPQNACA LTHCGILHKD 120 EGRLVEAAES YQKALQVDPS YKAAAECLAI VLTDIGTNIK LAGNTQDGIQ KYFEALKVDP 180 HYAPAYYNLG VVYSEMMQYD TALSFYEKAA SERPIYAEAY CNMGVIFKNR GDLESAITCY 240 ERCLTVSPNF EIAKNNMAIA LTDLGTKVKL EGDINQGVTL YKKALYYNWH YADAMYNLGV 300 AYGEMLKFDM AIVFYELAFH FNPHCAEACN NLGVIYKDRE NLDKAVECYQ LALSIKPNFS 360 QSLNNLGVVY TVQGKVDAAA SMIEKAIIAN PTYAEAYNNL GVLYRDAGDI ARAINAYEQC 420 LKIDPDSRNA GQNRLLAMNY IEEGHDDTLF EVHRDWGRRF MRLYPQYTSW DNSKDPERPL 480 VIGYVSPDYF THSVSYFIET PLVYHDYSNF KVIVYSAVVK ADSKTIRFRE KVLNKGGIWK 540 DIYGIDEKRV ANMVREDQVD ILVELTGHTA SNKLGMMACR PAPIQVTWIG YPNTTGLPTI 600 DYRITDSLAD PPETKQKHVE ELVRLPECFL CYTPSPEAGP ICPTPALSNG FVTFGSFNNL 660 AKITPKVLQV WARILCAIPN SRLVVKCKPF CSDSVRQRFL STLEQLGLEP LRVDLLPLIL 720 LNHDHMQAYS LMDISLDTFP YAGTTTTCES LYMGVPCVTM AGSVHAHNVG VSLLSKVGLE 780 HLIARNEDEY VELAQQLASD ISALQNLRMS LRNLMSKSPL CDGAKFILGL ESTYRKMWHR 840 YCRGDVPSLK RLELLQEVAT GDLSNKNSEP TRIANSREDS PGSVKANGYN TIPASKLNIH 900 TREENDGSSN HSSKQGKMS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00189 | TPR | 4.0e-17 | 151 | 249 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 5.0e-19 | 260 | 358 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 3.0e-22 | 327 | 426 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| COG3914 | Spy | 8.0e-90 | 309 | 841 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | O82039 | 0 | 11 | 919 | 10 | 932 | SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY |
| RefSeq | XP_002281883.1 | 0 | 10 | 905 | 9 | 911 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308458.1 | 0 | 7 | 919 | 6 | 934 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323412.1 | 0 | 7 | 901 | 6 | 913 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 11 | 919 | 8 | 930 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 3e-36 | 258 | 630 | 9 | 386 | B Chain B, Crystal Structure Of T-Cell Receptor V Beta Domain Variant Complexed With Superantigen Sec3 Mutant |
| PDB | 4gz6_D | 2e-23 | 652 | 847 | 524 | 715 | B Chain B, Crystal Structure Of T-Cell Receptor V Beta Domain Variant Complexed With Superantigen Sec3 Mutant |
| PDB | 4gz6_D | 1e-17 | 105 | 261 | 6 | 155 | B Chain B, Crystal Structure Of T-Cell Receptor V Beta Domain Variant Complexed With Superantigen Sec3 Mutant |
| PDB | 4gz6_D | 0.00000000000003 | 163 | 299 | 23 | 152 | B Chain B, Crystal Structure Of T-Cell Receptor V Beta Domain Variant Complexed With Superantigen Sec3 Mutant |
| PDB | 4gz6_D | 0.000000000003 | 323 | 433 | 6 | 116 | B Chain B, Crystal Structure Of T-Cell Receptor V Beta Domain Variant Complexed With Superantigen Sec3 Mutant |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 422 | 819 | 0 |
| HO781209 | 361 | 485 | 845 | 0 |
| HO781209 | 118 | 385 | 502 | 0 |
| HO781209 | 69 | 204 | 270 | 0.0002 |
| HO781209 | 58 | 322 | 377 | 4.8 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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