| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g37480.1 |
| Family | GH28 |
| Protein Properties | Length: 498 Molecular Weight: 54010.9 Isoelectric Point: 4.7838 |
| Chromosome | Chromosome/Scaffold: 03 Start: 44085131 End: 44088550 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 92 | 434 | 0 |
| ADKGGAQLYVPSGKWLTGSFNLTSHLTLFLERGAIIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWELFSSNSLNY SRPNLIEFVDSVDIIISNLTFLDSPAWGIHPVHCSNVQIQNITSRAPAEFPYTSGIVPDSSRYVCIENSNISTGHDAVVLKSGWDQYGIAYGKPTSSVHI SNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTKGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSALPIVGDITFKNVI GANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSPSWFCSNV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 498 Download |
| MQLFLHWIQN FLAPLQFQLV AHMKSLVAVL LLVAISTAVE SNGEDNGGPC KQNAFKARPH 60 SVSILEFGAV GDGITLNTVA FENAMFYLKS FADKGGAQLY VPSGKWLTGS FNLTSHLTLF 120 LERGAIIIAS QDYSHWDIVD FLPSYGRGIG RYRSLIYGQN LSDVVITGDN GTIDGQGSIW 180 WELFSSNSLN YSRPNLIEFV DSVDIIISNL TFLDSPAWGI HPVHCSNVQI QNITSRAPAE 240 FPYTSGIVPD SSRYVCIENS NISTGHDAVV LKSGWDQYGI AYGKPTSSVH ISNVYLQSSS 300 GAGLAFGSEM SGGISDIIAE KLHILNSPIG IELKTTKGRG GYMRGIFISD AELENISLGI 360 SMTGYSGFHP DDKYDTSALP IVGDITFKNV IGANISVAGN FSGIVESPFS TICLSNVTFS 420 LSSEPSPSWF CSNVIGFSED VIPEPCPDLQ SSYSKFSFSC FSSLYPLFSN VSGYLDHQPQ 480 ELQSLIFIHS IHEIQNS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-21 | 56 | 446 | 411 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-21 | 59 | 417 | 379 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 6.0e-25 | 60 | 443 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-26 | 156 | 434 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-49 | 62 | 356 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 36 | 447 | 12 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 36 | 464 | 35 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 36 | 464 | 100 | 532 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 23 | 447 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 36 | 464 | 12 | 443 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-38 | 60 | 416 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-38 | 60 | 416 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-38 | 60 | 416 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-38 | 60 | 416 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-16 | 106 | 390 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
