| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g37480.2 |
| Family | GH28 |
| Protein Properties | Length: 414 Molecular Weight: 44978.4 Isoelectric Point: 4.6326 |
| Chromosome | Chromosome/Scaffold: 03 Start: 44085131 End: 44088550 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 8 | 350 | 0 |
| ADKGGAQLYVPSGKWLTGSFNLTSHLTLFLERGAIIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWELFSSNSLNY SRPNLIEFVDSVDIIISNLTFLDSPAWGIHPVHCSNVQIQNITSRAPAEFPYTSGIVPDSSRYVCIENSNISTGHDAVVLKSGWDQYGIAYGKPTSSVHI SNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTKGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSALPIVGDITFKNVI GANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSPSWFCSNV | |||
| Full Sequence |
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| Protein Sequence Length: 414 Download |
| MFYLKSFADK GGAQLYVPSG KWLTGSFNLT SHLTLFLERG AIIIASQDYS HWDIVDFLPS 60 YGRGIGRYRS LIYGQNLSDV VITGDNGTID GQGSIWWELF SSNSLNYSRP NLIEFVDSVD 120 IIISNLTFLD SPAWGIHPVH CSNVQIQNIT SRAPAEFPYT SGIVPDSSRY VCIENSNIST 180 GHDAVVLKSG WDQYGIAYGK PTSSVHISNV YLQSSSGAGL AFGSEMSGGI SDIIAEKLHI 240 LNSPIGIELK TTKGRGGYMR GIFISDAELE NISLGISMTG YSGFHPDDKY DTSALPIVGD 300 ITFKNVIGAN ISVAGNFSGI VESPFSTICL SNVTFSLSSE PSPSWFCSNV IGFSEDVIPE 360 PCPDLQSSYS KFSFSCFSSL YPLFSNVSGY LDHQPQELQS LIFIHSIHEI QNS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-14 | 5 | 333 | 349 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-15 | 43 | 362 | 332 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-22 | 59 | 359 | 311 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-26 | 72 | 350 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-42 | 8 | 272 | 295 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 1 | 363 | 62 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 1 | 380 | 85 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 1 | 380 | 150 | 532 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 1 | 363 | 64 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 1 | 380 | 62 | 443 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8e-34 | 4 | 332 | 51 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8e-34 | 4 | 332 | 51 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8e-34 | 4 | 332 | 51 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8e-34 | 4 | 332 | 51 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-16 | 22 | 306 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797919 | 350 | 1 | 346 | 0 |
| HO797483 | 369 | 1 | 365 | 0 |
| HO780931 | 322 | 2 | 317 | 0 |
| HO780931 | 51 | 315 | 365 | 0.0000000002 |
| HO797919 | 20 | 346 | 365 | 0.86 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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