| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g38140.1 |
| Family | GH28 |
| Protein Properties | Length: 463 Molecular Weight: 50650.5 Isoelectric Point: 7.1603 |
| Chromosome | Chromosome/Scaffold: 03 Start: 44545281 End: 44548665 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 90 | 418 | 0 |
| DSACQSESAVNVILVPQGFSFLVQSTIFTGPCQGVLELKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGT TLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITC GPGHGISIGSLGNHNSRACVSNIMVRDSFIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKSSAVSVSNIIYTNIKGTYD IRSPPMRFACSDSVPCTNLTLSDIELLPS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 463 Download |
| MKHSHILPLA SCIFFLTLVI LVQARHHSHH AKHKHSHPHK SSKTPKPAPP PSPPHNQNYN 60 NASGIFDLRK FGAIGDGETD DTESFKMAWD SACQSESAVN VILVPQGFSF LVQSTIFTGP 120 CQGVLELKVD GTLMPPDGPE SWPKNNSRHQ WLVFYRINGM SLEGSGLIDG RGEKWWDLPC 180 KPHKGPHGTT LPGPCDSPIA IRFFMSSNLT VQGLRIKNSP QFHFRFDGCK NVHIESIYIT 240 APKLSPNTDG IHIENTNDVK IYNSVISNGD DCVSIGSGCN DVDIKNITCG PGHGISIGSL 300 GNHNSRACVS NIMVRDSFIK VTDNGVRIKT WQGGSGSVSG VTFSNIHMVS VRNPIIIDQF 360 YCLTKECTNK SSAVSVSNII YTNIKGTYDI RSPPMRFACS DSVPCTNLTL SDIELLPSQG 420 DIVHDPFCWN AYGDLETLTI PPVSCLLEST PQLVLDYDIT RC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-78 | 63 | 453 | 397 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 9.0e-84 | 61 | 442 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-87 | 93 | 415 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-98 | 71 | 415 | 348 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-117 | 65 | 450 | 388 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 61 | 462 | 84 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 61 | 462 | 65 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302793.1 | 0 | 1 | 462 | 1 | 457 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320271.1 | 0 | 61 | 462 | 38 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 57 | 462 | 135 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 9e-24 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 9e-24 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 9e-24 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 9e-24 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 9e-24 | 160 | 415 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
