| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma03g38350.2 |
| Family | GH28 |
| Protein Properties | Length: 466 Molecular Weight: 51293.7 Isoelectric Point: 4.7497 |
| Chromosome | Chromosome/Scaffold: 03 Start: 44698287 End: 44701784 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 416 | 0 |
| ADKGGAKLFVPAGRWLTGSFDLISHLTLSLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNRFWNR SLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPHDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPST NIIIHRLVGRTQTSGIAIGSEMSGGVSEVHAEDIQFYDSYNAIRIKTSPGRGGYVRNIYVSNVTLANVDIAITFTGLYGEHPDDAYNPNALPVIEKITIK DVVGENIKTAGLIEGIEGDNFVNICLSNIILNVTSNYPWNCSYV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 466 Download |
| MRIPSTLVEV LLVLALFCCS PWTVWSSTTL CQQTNEEVRP HSVSITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGRWLTG SFDLISHLTL SLDKDAVILG STNPEDWPVV 120 DPLPSYGRGR ELPGGRHKSL IYGHNLTDVI ITGNNGTIDG QGSIWWNRFW NRSLDYTRPH 180 LVELMNSTGV LISNLTFLNS PFWTIHPVYC SQVTVQNVRI LAPHDSPNTD GIDPDSSDNV 240 CIEDCYISTG DDLIAIKSGW DEYGIAYGRP STNIIIHRLV GRTQTSGIAI GSEMSGGVSE 300 VHAEDIQFYD SYNAIRIKTS PGRGGYVRNI YVSNVTLANV DIAITFTGLY GEHPDDAYNP 360 NALPVIEKIT IKDVVGENIK TAGLIEGIEG DNFVNICLSN IILNVTSNYP WNCSYVKGYS 420 DLVQPEACEP LKERIFPGHC SDCYYLTNQI QSSNSQNRGA WFMSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-26 | 44 | 340 | 305 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-26 | 11 | 380 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-30 | 141 | 380 | 245 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 5.0e-33 | 41 | 384 | 352 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 2.0e-66 | 43 | 340 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18828.1 | 0 | 1 | 459 | 1 | 459 | unknown [Glycine max] |
| EMBL | CBI37055.1 | 0 | 17 | 465 | 17 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 17 | 465 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 1 | 444 | 1 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 22 | 465 | 32 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 30 | 403 | 6 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-21 | 87 | 416 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
