Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma04g09670.1 |
Family | PL4 |
Protein Properties | Length: 644 Molecular Weight: 73361.7 Isoelectric Point: 4.9583 |
Chromosome | Chromosome/Scaffold: 04 Start: 7947319 End: 7952385 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 620 | 0 |
VQLTIQDNHVVMENGMLKVTLSNPEGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVMVENEDQVELSFTRTWDVSLEG KLVPLNIDKRFVMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDD KYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFYAGEAWKKVFGPVFIYLNSPYDGSHPLKLW EDAKLQMLVEVQSWPYSFPESENFAKWDERGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVFA WVPGFIGDYKYDIVMKITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYFNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDY TKDWFFAQVTRKKDDNTYQGTTWQIKFKLDNVNKSSSYKLRVALASAALSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDMPGTQLVE GDNTIFLTQTRGNGP |
Full Sequence |
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Protein Sequence Length: 644 Download |
MPSLGVQLTI QDNHVVMENG MLKVTLSNPE GIVTGIQYND IDNLLEVLND ESNRGYWDLV 60 WSSPTSTGTS GTFDVIKGTT FKVMVENEDQ VELSFTRTWD VSLEGKLVPL NIDKRFVMLR 120 GSSGFYSYAI YEHLEDWPAF NLDETRIAFK LRKDKFHYMA MADNRQRNMP LPDDRLPPKG 180 KALAYPEAVL LVNPIEPELK GEVDDKYQYS CDNKDSQVHG WICMDPAVGF WLITPSNEFR 240 SGGPLKQNLT SHVGPTTLAV FLSAHYSGED LVPKFYAGEA WKKVFGPVFI YLNSPYDGSH 300 PLKLWEDAKL QMLVEVQSWP YSFPESENFA KWDERGNVSG RLLVRERYIN DDYVSAKGAY 360 VGLAPPGDVG SWQRECKNYQ FWAKADDDGY FSISNIRAGD YNVFAWVPGF IGDYKYDIVM 420 KITEGCDIDL GDLVYEPPRD GPTLWEIGIP DRSAAEFYVP DPNPKYINKL YFNHPDKFRQ 480 YGLWERYAEL YPDKDLIYTV GVSDYTKDWF FAQVTRKKDD NTYQGTTWQI KFKLDNVNKS 540 SSYKLRVALA SAALSELQVR VNNPKAPRPL FSSGLIGRDN SIARHGIHGL YWLYNVDMPG 600 TQLVEGDNTI FLTQTRGNGP FQAIMYDYIR LEGPPSSSFN KKN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 6.0e-31 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-54 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-72 | 8 | 294 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-96 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 640 | 1 | 650 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 642 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 633 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 641 | 1 | 640 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 637 | 1 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR828586 | 235 | 167 | 401 | 0 |
DW479599 | 294 | 1 | 294 | 0 |
DW479600 | 305 | 1 | 302 | 0 |
DY293973 | 350 | 1 | 347 | 0 |
DT552229 | 293 | 17 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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