Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma04g33861.1 |
Family | CE8 |
Protein Properties | Length: 250 Molecular Weight: 28191.7 Isoelectric Point: 6.7646 |
Chromosome | Chromosome/Scaffold: 04 Start: 39637110 End: 39639655 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 55 | 244 | 0 |
KKVVVQANKNYLIIQGQGYLNTTIEWNNTANSTGYTSYSYSFFIFASKFTAYNISFKNMAPPPPPRVVGAQAVALRDTLNDDSGRHYFKECFIQGSIDFI LGNAKSLYEDCTIKCVAKEEKDEISGSITAQGRQSMNEESGFSFVNCRIVGSGSGSGREWLGRAWGAYATVFFSRTYMSDVVAPDGWNDL |
Full Sequence |
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Protein Sequence Length: 250 Download |
MQFTFNCLSL AGKLTNHEIP EKLVEDVKKK SREFHDFSVE EKEFSDKVPF TPIRKKVVVQ 60 ANKNYLIIQG QGYLNTTIEW NNTANSTGYT SYSYSFFIFA SKFTAYNISF KNMAPPPPPR 120 VVGAQAVALR DTLNDDSGRH YFKECFIQGS IDFILGNAKS LYEDCTIKCV AKEEKDEISG 180 SITAQGRQSM NEESGFSFVN CRIVGSGSGS GREWLGRAWG AYATVFFSRT YMSDVVAPDG 240 WNDLRDPFRD |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-46 | 54 | 249 | 203 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-48 | 103 | 250 | 165 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 5.0e-52 | 54 | 243 | 213 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-62 | 54 | 250 | 220 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 4.0e-68 | 55 | 250 | 216 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 54 | 250 | 143 | 352 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_181209.1 | 0 | 54 | 250 | 129 | 338 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 54 | 250 | 53 | 262 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 54 | 250 | 57 | 266 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519425.1 | 0 | 54 | 250 | 111 | 320 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 3e-17 | 54 | 241 | 43 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 2e-16 | 54 | 241 | 47 | 249 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 0.000000007 | 46 | 237 | 57 | 285 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000002 | 127 | 234 | 150 | 258 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000002 | 127 | 234 | 150 | 258 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AW595987 | 169 | 54 | 205 | 0 |
GW464494 | 198 | 57 | 237 | 0 |
EE616069 | 213 | 57 | 250 | 0 |
EE623451 | 213 | 57 | 250 | 0 |
EE623529 | 213 | 57 | 250 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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