Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma04g34260.2 |
Family | PL1 |
Protein Properties | Length: 427 Molecular Weight: 47802.6 Isoelectric Point: 9.3345 |
Chromosome | Chromosome/Scaffold: 04 Start: 40391060 End: 40393903 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 158 | 356 | 0 |
IIFDRNMNIKLHAELMLTDNKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDIKKCSGGLIRDSMDHYGVRAMSDGDAISVFGSTYVWIDHVSFTNC DDGLIDVVSASTAVTISNCHLTKHNDVLLFGASDSYSGDKIMQVTLAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSQQPTIISQGNRFIV |
Full Sequence |
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Protein Sequence Length: 427 Download |
METSKFSLLF FYVICLAIFP TLNANIGHFD HVWHRRLKEA REAAKQAYKP NPMKVTAEFN 60 THVIRAMRGS NNSRRGLSNQ YDGPCKATNP IDKCWRCDPN WEKNRKRLAD CALGFGHGTT 120 GGKDGKIYVV NDSSDNDLVN PKPGTLRHAA IQREPLWIIF DRNMNIKLHA ELMLTDNKTI 180 DARGANVHIS EGAQITLQYV KNIIIHGLHI HDIKKCSGGL IRDSMDHYGV RAMSDGDAIS 240 VFGSTYVWID HVSFTNCDDG LIDVVSASTA VTISNCHLTK HNDVLLFGAS DSYSGDKIMQ 300 VTLAFNHFGK GLIQRMPRCR WGFFHIVNND YTHWLMYAIG GSQQPTIISQ GNRFIVTKRD 360 YAPESVWKNW NWRSEGDLLM NGAFFVQSGK NVAKNPKAEI IAKPGKAVSS LTRFAGPLKC 420 EVNKSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-14 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 6.0e-22 | 177 | 354 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-63 | 177 | 354 | 186 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-73 | 163 | 358 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 426 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 17 | 426 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 11 | 426 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 6 | 426 | 7 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 426 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 416 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 416 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 108 | 345 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 234 | 375 | 187 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000002 | 167 | 383 | 71 | 312 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |