Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma05g04770.2 |
Family | GT8 |
Protein Properties | Length: 678 Molecular Weight: 78678.3 Isoelectric Point: 8.298 |
Chromosome | Chromosome/Scaffold: 05 Start: 3956968 End: 3960265 |
Description | plant glycogenin-like starch initiation protein 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 396 | 544 | 6.2e-32 |
KGSEKDAYNEWNYNKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATRNNGTLFNSGVMVVELSNCTFKLLMDHINEFESYNGGDQGYLNEIFTW WHRIPRHMNFLKHFWVGDEEEKKQMKTLLFGADPPILYVLHYLGMKPWL |
Full Sequence |
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Protein Sequence Length: 678 Download |
MAEEGAARGG GRRSCARKKE LEGGTNGRRR NKKKRKWKNV DLFRRRLPKS NAKDVENEKP 60 IQLSVQDRSS RCNFSFLKPF VLLMTICGTH VTLLYSPKVY NNNHIYQALA PGETKMFSKY 120 IVKMELRIES THRVKFISCR QNFVNRWVWG GLDRGYISNV DINWGDILQI TAKLTGKKEF 180 QGVGLLNFNN TELDHWEQLI PNVTHVVLEL EYAAKNMTWE SQYPEWIDEE EETEVPVCPS 240 LPSLRSTGIR LNLIAVKLPH ANGGNWSRDV ARLHLQLAVA RLTTSFKGNY PLYVLFVTNF 300 FPIPNLFTCK ELVGHVKGMF LGEKLHLPLG SCELAFPLRG KELSYVGNVR REAYATILHS 360 AHVYVCGAIA AEQSIHMSGS TRDLVILVDE TIRQFKGSEK DAYNEWNYNK FRLWQLTDYD 420 KIIFIDADLL ILRNIDFLFG MPEITATRNN GTLFNSGVMV VELSNCTFKL LMDHINEFES 480 YNGGDQGYLN EIFTWWHRIP RHMNFLKHFW VGDEEEKKQM KTLLFGADPP ILYVLHYLGM 540 KPWLCFRDYD CNWNCDVFHE FPSDVAHERW WKVHDVMPEL LQQFCMLKSK QKAQLEWDRR 600 QAEVANYTSG HWQIKVKDTR LKKCIDNLCS WENMLKHWGE TNWTDDESHT PTPPAIATSS 660 LSDLRLVNLA FYHPCKC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00505 | Glyco_transf_8 | 7.0e-9 | 406 | 543 | 167 | + Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. | ||
cd04194 | GT8_A4GalT_like | 5.0e-10 | 416 | 543 | 157 | + A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS. | ||
cd06914 | GT8_GNT1 | 2.0e-12 | 364 | 543 | 234 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
pfam01501 | Glyco_transf_8 | 4.0e-28 | 355 | 545 | 257 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 2.0e-53 | 352 | 577 | 256 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33317.1 | 0 | 23 | 664 | 2 | 636 | secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] |
RefSeq | XP_002275240.1 | 0 | 41 | 662 | 20 | 635 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307022.1 | 0 | 157 | 664 | 9 | 544 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310513.1 | 0 | 23 | 664 | 2 | 630 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517237.1 | 0 | 32 | 660 | 15 | 625 | glycogenin, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u2t_A | 3e-16 | 340 | 543 | 14 | 242 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese |
PDB | 1zcv_A | 8e-16 | 409 | 588 | 105 | 288 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |
PDB | 3v8z_A | 0.000000000000002 | 409 | 588 | 105 | 288 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |
PDB | 3v8y_A | 0.000000000000002 | 409 | 588 | 105 | 288 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
PDB | 1zct_B | 0.000000000000002 | 409 | 588 | 105 | 288 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO985529 | 240 | 439 | 678 | 0 |
DT514703 | 271 | 398 | 668 | 0 |
DY825283 | 299 | 370 | 648 | 0 |
DW344973 | 272 | 404 | 675 | 0 |
GR707193 | 283 | 328 | 590 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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