| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma05g08730.1 |
| Family | GH28 |
| Protein Properties | Length: 438 Molecular Weight: 46748.8 Isoelectric Point: 7.8697 |
| Chromosome | Chromosome/Scaffold: 05 Start: 8608280 End: 8612685 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 65 | 403 | 0 |
| AACKVEGSTMVVPSGSVFLVKPISFSGPNCEPNIVFQLDGKIIAPTGSAAWGSGTLQWLEFSKLNKITIRGKGVIDGQGSVWWNNDSPTYNPTEVMLESN GRLPSTKPTALRFYGSDGVTVTGITIQNSQQTHLKFDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCISIQTGCSDIYVHNVNCG PGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFSNVQVSGVQIPILIDQYYCDGGKCRNESSAVAVSAIHYVNIKGTYTK QPIYFACSDNLPCTGITLDTIRLESAQETKNSNVPFCWE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| MKLNSIALII GIAFSVWSSS CTAARVSHWR KLKAAYATTF NVLDYGAKGD GHADDTKAFQ 60 NAWVAACKVE GSTMVVPSGS VFLVKPISFS GPNCEPNIVF QLDGKIIAPT GSAAWGSGTL 120 QWLEFSKLNK ITIRGKGVID GQGSVWWNND SPTYNPTEVM LESNGRLPST KPTALRFYGS 180 DGVTVTGITI QNSQQTHLKF DSCTNVQVSG ISVSSPGDSP NTDGIHLQNS QNVVIYSSTL 240 ACGDDCISIQ TGCSDIYVHN VNCGPGHGIS IGSLGRENTK ACVRNVTVRD VTIQNTLTGV 300 RIKTWQGGSG SVQNIMFSNV QVSGVQIPIL IDQYYCDGGK CRNESSAVAV SAIHYVNIKG 360 TYTKQPIYFA CSDNLPCTGI TLDTIRLESA QETKNSNVPF CWEAYGELKT KTVPPVECLQ 420 RGNPSKAGGI NSKIDSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-84 | 32 | 388 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 6.0e-85 | 36 | 394 | 364 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-88 | 72 | 399 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-99 | 38 | 398 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-113 | 40 | 436 | 401 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD46483.1 | 0 | 1 | 437 | 6 | 443 | polygalacturonase PG1 [Glycine max] |
| GenBank | AAD46484.1 | 0 | 1 | 437 | 3 | 439 | polygalacturonase PG2 [Glycine max] |
| GenBank | ACU24545.1 | 0 | 1 | 437 | 6 | 443 | unknown [Glycine max] |
| DDBJ | BAH56488.1 | 0 | 1 | 437 | 5 | 510 | polygalacturonase 1 [Prunus persica] |
| EMBL | CBI34901.1 | 0 | 32 | 437 | 65 | 483 | unnamed protein product [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-25 | 103 | 399 | 41 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-25 | 103 | 399 | 41 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-25 | 103 | 399 | 41 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-25 | 103 | 399 | 41 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-25 | 103 | 399 | 41 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
