| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma05g21081.1 |
| Family | PL1 |
| Protein Properties | Length: 229 Molecular Weight: 26106.3 Isoelectric Point: 4.8866 |
| Chromosome | Chromosome/Scaffold: 05 Start: 25416631 End: 25418058 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| PL1 | 27 | 151 | 1.90002e-41 |
| QTESDRDGISIFGPKDIWIDHYTLSRCKDGLIDAVMGSIGITINNMLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVINNDF TEWEMYAIGGSGEPTINSQGNRYMA | |||
| Full Sequence |
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| Protein Sequence Length: 229 Download |
| MASSKKNNEC SERLSEAQSS PEHYGFQTES DRDGISIFGP KDIWIDHYTL SRCKDGLIDA 60 VMGSIGITIN NMLSHHNEVM LLGHSDDYLP DSGMQVTIAF NHFGEKLVQR MPRCRRGYIH 120 VINNDFTEWE MYAIGGSGEP TINSQGNRYM APENPFAKEV TKRVDTQQSK WKGWNWRSEG 180 DILLNGAFFV ASGEELEVKY EKTYIELMKF ITDRLGPDEE VFNILFFL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-18 | 33 | 164 | 145 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-46 | 19 | 149 | 140 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-51 | 30 | 152 | 133 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 15 | 204 | 203 | 393 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 15 | 204 | 184 | 374 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 15 | 204 | 204 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002326380.1 | 0 | 15 | 204 | 135 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519460.1 | 0 | 15 | 204 | 200 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 31 | 198 | 149 | 318 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 31 | 198 | 149 | 318 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.00000000003 | 30 | 124 | 187 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000000008 | 31 | 151 | 115 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.0000000002 | 39 | 216 | 151 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR088237 | 185 | 21 | 204 | 0 |
| ES923365 | 186 | 15 | 199 | 0 |
| EC956551 | 191 | 15 | 204 | 0 |
| EV166854 | 178 | 18 | 194 | 0 |
| DV139227 | 179 | 15 | 192 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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