| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma05g25470.1 |
| Family | AA7 |
| Protein Properties | Length: 537 Molecular Weight: 60693.6 Isoelectric Point: 9.5559 |
| Chromosome | Chromosome/Scaffold: 05 Start: 31573989 End: 31575896 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 71 | 530 | 0 |
| NASSKPLVIVTPLVISHVQVTIICSQHHGMQIRTRSGGHDYEGLSYIAKDPFVVLDLKNLREIKVDVEKSNAWVQAGSTIGELYYSISQKSKTLGFPAGV CPTVGTGGHFSGGGYGFLMRKYGLAADNVIDAHIVDVKGNLLDRKAMGEDLFWAIRGGGGASFGVIVAWKIKLVPVPSKVTVFRIARTLEQNATEIIRKW QLVANKFDQRLIIRVAMTRVNSSQRGKLTIQARFESMFLGRVDQLIPLMQKRFPELGLVKEDCTEMSWINSILFMKAGLVGSASNETLEVLLNRTQAVFL TFKGKSDYVRKPISVVGLRGLWRLFYEDEARDASVEFAPYGGRMDEISESEIPFPHRSGNMFHIHYAVYWQEEGDEAAQRYINWLRRLYKYMEPYVSKSP RAAYLNYRDLDIGVNNNYDYTSYRQASIWGLKYFNNNFKRLAKVKVKVDPQNFFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 537 Download |
| MMHLSLYFTV VAIALLFSFT SSSADTHENF VQCLYNYPNS GTSISKVVYT QTNSSYTSTL 60 DSSIQISRFL NASSKPLVIV TPLVISHVQV TIICSQHHGM QIRTRSGGHD YEGLSYIAKD 120 PFVVLDLKNL REIKVDVEKS NAWVQAGSTI GELYYSISQK SKTLGFPAGV CPTVGTGGHF 180 SGGGYGFLMR KYGLAADNVI DAHIVDVKGN LLDRKAMGED LFWAIRGGGG ASFGVIVAWK 240 IKLVPVPSKV TVFRIARTLE QNATEIIRKW QLVANKFDQR LIIRVAMTRV NSSQRGKLTI 300 QARFESMFLG RVDQLIPLMQ KRFPELGLVK EDCTEMSWIN SILFMKAGLV GSASNETLEV 360 LLNRTQAVFL TFKGKSDYVR KPISVVGLRG LWRLFYEDEA RDASVEFAPY GGRMDEISES 420 EIPFPHRSGN MFHIHYAVYW QEEGDEAAQR YINWLRRLYK YMEPYVSKSP RAAYLNYRDL 480 DIGVNNNYDY TSYRQASIWG LKYFNNNFKR LAKVKVKVDP QNFFRNEQSI PLLESE* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 4.0e-16 | 473 | 531 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 9.0e-17 | 76 | 213 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| COG0277 | GlcD | 3.0e-17 | 76 | 533 | 476 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB33033.1 | 0 | 1 | 536 | 1 | 535 | CPRD2 [Vigna unguiculata] |
| RefSeq | XP_002330608.1 | 0 | 21 | 535 | 24 | 535 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332196.1 | 0 | 22 | 535 | 16 | 526 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333020.1 | 0 | 1 | 535 | 1 | 532 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333339.1 | 0 | 1 | 535 | 1 | 532 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 24 | 533 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 27 | 533 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 27 | 533 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 28 | 533 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 28 | 533 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
