Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma05g26390.2 |
Family | GH28 |
Protein Properties | Length: 491 Molecular Weight: 52816.3 Isoelectric Point: 4.8387 |
Chromosome | Chromosome/Scaffold: 05 Start: 32372024 End: 32378499 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 119 | 442 | 0 |
KAACAVDSGVVLAPENYIFKISSTIFSGPCKPGLVFQVDGTLMAPDGPNSWPEADSRNQWLVFYRLDQMTLNGTGTIEGNGDKWWDLPCKPHRGPSGKTL SGPCGSPAMIRFFMSSNLKVNGLKIQNSPQFHMIFNGCQGVLIDKLSISSPKLSPNTDGIHVENSKYVGIYNSMISNGDDCISIGPGSSNVDIAGLTCGP SHGISIGSLGVHNSQACVSNLTVRDSIIRESDNGLRIKTWQGGMGSVSSLRFENIQMENVGNCIIIDQYYCMSKECLNQTSAVHVNDVSYSNIKGTYDVR TAPIHFACSDTVACTNITLSEVEL |
Full Sequence |
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Protein Sequence Length: 491 Download |
MDLIRVFFTL CITVILLNHN FGNVEGRYHH HTKQKKVSTA PADSSTEPEK PSVPPPSDSP 60 SVPSDPSASP PSNSPSVPSD PYPKDNQTSS SDCVFDVRSF GAVGDGCADD TRAFRAAWKA 120 ACAVDSGVVL APENYIFKIS STIFSGPCKP GLVFQVDGTL MAPDGPNSWP EADSRNQWLV 180 FYRLDQMTLN GTGTIEGNGD KWWDLPCKPH RGPSGKTLSG PCGSPAMIRF FMSSNLKVNG 240 LKIQNSPQFH MIFNGCQGVL IDKLSISSPK LSPNTDGIHV ENSKYVGIYN SMISNGDDCI 300 SIGPGSSNVD IAGLTCGPSH GISIGSLGVH NSQACVSNLT VRDSIIRESD NGLRIKTWQG 360 GMGSVSSLRF ENIQMENVGN CIIIDQYYCM SKECLNQTSA VHVNDVSYSN IKGTYDVRTA 420 PIHFACSDTV ACTNITLSEV ELLPFEGALL DDPFCWNAYG TQETLTIPPI NCLREGDPET 480 VGDLSEYQCS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-67 | 87 | 473 | 394 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-70 | 90 | 442 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-81 | 97 | 442 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-90 | 128 | 442 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-108 | 90 | 469 | 383 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC87913.1 | 0 | 1 | 336 | 1 | 336 | polygalacturonase precursor [Glycine max] |
GenBank | ABC87915.1 | 0 | 1 | 336 | 1 | 336 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002263668.1 | 0 | 19 | 489 | 19 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 489 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 489 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-23 | 156 | 442 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-23 | 156 | 442 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-23 | 156 | 442 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-23 | 156 | 442 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-23 | 156 | 442 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |