y
Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma05g26390.3 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 45726.6 Isoelectric Point: 5.1777 |
Chromosome | Chromosome/Scaffold: 05 Start: 32372024 End: 32378499 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 75 | 366 | 0 |
HSYNQVDGTLMAPDGPNSWPEADSRNQWLVFYRLDQMTLNGTGTIEGNGDKWWDLPCKPHRGPSGKTLSGPCGSPAMIRFFMSSNLKVNGLKIQNSPQFH MIFNGCQGVLIDKLSISSPKLSPNTDGIHVENSKYVGIYNSMISNGDDCISIGPGSSNVDIAGLTCGPSHGISIGSLGVHNSQACVSNLTVRDSIIRESD NGLRIKTWQGGMGSVSSLRFENIQMENVGNCIIIDQYYCMSKECLNQTSAVHVNDVSYSNIKGTYDVRTAPIHFACSDTVACTNITLSEVEL |
Full Sequence |
---|
Protein Sequence Length: 415 Download |
MDACMLTQFH FLCTNLTLYK TLFTHNSSFT ELLDRSFFLH HNLLTYTSHI LHVNSIAFAW 60 LEKLPELTKF EEKTHSYNQV DGTLMAPDGP NSWPEADSRN QWLVFYRLDQ MTLNGTGTIE 120 GNGDKWWDLP CKPHRGPSGK TLSGPCGSPA MIRFFMSSNL KVNGLKIQNS PQFHMIFNGC 180 QGVLIDKLSI SSPKLSPNTD GIHVENSKYV GIYNSMISNG DDCISIGPGS SNVDIAGLTC 240 GPSHGISIGS LGVHNSQACV SNLTVRDSII RESDNGLRIK TWQGGMGSVS SLRFENIQME 300 NVGNCIIIDQ YYCMSKECLN QTSAVHVNDV SYSNIKGTYD VRTAPIHFAC SDTVACTNIT 360 LSEVELLPFE GALLDDPFCW NAYGTQETLT IPPINCLREG DPETVGDLSE YQCS* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-60 | 79 | 397 | 324 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-63 | 98 | 366 | 272 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-73 | 79 | 366 | 291 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 79 | 366 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-97 | 79 | 393 | 317 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25976.1 | 0 | 79 | 413 | 41 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_175244.1 | 0 | 79 | 402 | 140 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 79 | 413 | 143 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 79 | 413 | 148 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 79 | 413 | 146 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-24 | 78 | 366 | 38 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-24 | 78 | 366 | 38 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-24 | 78 | 366 | 38 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-24 | 78 | 366 | 38 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-24 | 78 | 366 | 38 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CX663441 | 285 | 129 | 413 | 0 |
DW479564 | 264 | 79 | 342 | 0 |
GR169315 | 261 | 101 | 361 | 0 |
ES849368 | 281 | 79 | 357 | 0 |
BE346184 | 205 | 109 | 313 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|