| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma05g37490.1 |
| Family | GH28 |
| Protein Properties | Length: 493 Molecular Weight: 54005.6 Isoelectric Point: 5.1694 |
| Chromosome | Chromosome/Scaffold: 05 Start: 41070526 End: 41073663 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 444 | 0 |
| ASSGGSQLYVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGDNGTIDGQGDLWWQKFRKG ELKYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPIYSSNLVVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK QLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIFVRRMTMKTMKWAFWMTGNYGSHADDNYDPNALPVIQNINY RDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MSPYEKIPIA QRRTCSPSKR IKVMDMLLLL CVLLVALPNL AVVESRRAPV LDYFEYCAMS 60 CRAYSASLEE FGGVGDGTTL NTKAFQAAID HLSQYASSGG SQLYVPPGKW LTGSFNLTSH 120 FTLFLHKDAV ILASQDENDW PVIDPLPSYG RGRDTQGGRF SSLIFGTNLT DVIITGDNGT 180 IDGQGDLWWQ KFRKGELKYT RPYLIEIMYS DNVQISNLTL VNSPSWNVHP IYSSNLVVQG 240 ITILAPVTSP NTDGINPDSC TNTRIEDCYI VSGDDCVAVK SGWDEYGIAY GMPTKQLVIR 300 RLTCISPFSA VIALGSEMSG GIQDVRAEDI VAINSESGVR IKTAVGRGGY VKDIFVRRMT 360 MKTMKWAFWM TGNYGSHADD NYDPNALPVI QNINYRDMVA ENVTMAARLE GISGDPFTGI 420 CISNVTIQLA KKAKKVPWTC TDIAGISSDV TPAPCGLLPD QGEEKIGACT FPEESLPIED 480 IKVQTCTYRR NL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-18 | 70 | 361 | 307 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-24 | 46 | 442 | 417 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-24 | 70 | 365 | 307 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-31 | 164 | 455 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-61 | 66 | 362 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 44 | 491 | 41 | 488 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| RefSeq | XP_002277736.1 | 0 | 44 | 491 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002278930.1 | 0 | 44 | 488 | 31 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299511.1 | 0 | 18 | 490 | 7 | 477 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 43 | 490 | 30 | 477 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 65 | 431 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-16 | 82 | 401 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
