y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma0615s00200.2 |
Family | AA3 |
Protein Properties | Length: 379 Molecular Weight: 41051.9 Isoelectric Point: 7.2804 |
Chromosome | Chromosome/Scaffold: 615 Start: 661 End: 2374 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 29 | 318 | 6.30024e-42 |
AKSAPQILTYDYIVIGGGTCGCPLAATLSQGARVLVLERRGSPYTNPEQINIKNFVNSLADISPSSFSQPFISRDGVLNSRARVLGGGSVLNAGFYSRAS STYIRDSGWNETLAKDSYKWVEEKVAFEPPMLQWQSAVKDGLLEVGVLPYSGFTFDHLYGTKVGGTIFDKEGNRHTAADLLEYADPKRISVYLHATVQKI LFKYNTEKRRPQAYGVIFKDALGVMHRAYLSTKGKNELILSAGAIGSPQLLLLSGIGHANHLEAHGIKVVLDQPLVGQGMADNPLNVLVV |
Full Sequence |
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Protein Sequence Length: 379 Download |
MGWVSEQFIC AFLVGCTFLS VLSHPDKEAK SAPQILTYDY IVIGGGTCGC PLAATLSQGA 60 RVLVLERRGS PYTNPEQINI KNFVNSLADI SPSSFSQPFI SRDGVLNSRA RVLGGGSVLN 120 AGFYSRASST YIRDSGWNET LAKDSYKWVE EKVAFEPPML QWQSAVKDGL LEVGVLPYSG 180 FTFDHLYGTK VGGTIFDKEG NRHTAADLLE YADPKRISVY LHATVQKILF KYNTEKRRPQ 240 AYGVIFKDAL GVMHRAYLST KGKNELILSA GAIGSPQLLL LSGIGHANHL EAHGIKVVLD 300 QPLVGQGMAD NPLNVLVVPS PVPVEASLVQ TLGITKFGSF IEAASGLSLG HSWSERLQGI 360 FEFVSNQFDK FGPVEFTG* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 2.0e-5 | 37 | 72 | 38 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 5.0e-18 | 39 | 310 | 308 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 3.0e-19 | 198 | 310 | 117 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 5.0e-26 | 36 | 310 | 310 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 2.0e-138 | 37 | 348 | 312 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI31862.1 | 0 | 27 | 346 | 36 | 353 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001119417.1 | 0 | 27 | 365 | 2 | 341 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267807.1 | 0 | 27 | 356 | 36 | 362 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267848.1 | 0 | 27 | 356 | 36 | 362 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002510860.1 | 0 | 27 | 367 | 35 | 376 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 37 | 336 | 26 | 324 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 37 | 336 | 26 | 324 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 37 | 336 | 26 | 324 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 37 | 336 | 26 | 324 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 37 | 336 | 26 | 324 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |