y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma06g09760.3 |
Family | PL4 |
Protein Properties | Length: 637 Molecular Weight: 72437.1 Isoelectric Point: 6.1156 |
Chromosome | Chromosome/Scaffold: 06 Start: 7307050 End: 7313785 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 617 | 0 |
VQLHIQDHHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGMFDVIKGTCFKVIVQNEEQVELSFARMWDHSLEGKFV PLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDISETRITFKLRKDKFQYMAMADNRQRVMPFPEDRLAGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQ YSCVNMNNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKFRGGESWKKVFGPVYIYLNSGAVGDNPLWLWEDA KIQMMNEVQSWPYSFPASEDFLKSDQRGNVSGRLLVLDRYVCTDLIPANSAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIKNVRPGDYNLFAWVP GFVGDYKFGDFMKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPSPQHINKLFINHPDRFRQYGLWDRYSELYPDADLVYTIGVSDYTKD WFYAQAPRKKVDNTLQGTTWQIKFEICSVVKGSTYKLRVAIASATLAELQIRVNDPNARRPVFTSGLIGRDNSIARHGIQGIYWLYHVNIPGSLLVDGTN TIYFSQPRCTSP |
Full Sequence |
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Protein Sequence Length: 637 Download |
MSGPGVQLHI QDHHVVMDNG IVQVTLSNPD GIVTGIRYNG VDNLLEVLNK ETNRGYWDLV 60 WSAPGSKGMF DVIKGTCFKV IVQNEEQVEL SFARMWDHSL EGKFVPLNID KRFIMLRGSS 120 GFYSYGIYEH LNGWPDFDIS ETRITFKLRK DKFQYMAMAD NRQRVMPFPE DRLAGRCQTL 180 GYPEAVLLVN PKDPRLKGEV DDKYQYSCVN MNNRVHGWIS FSPPVGFWQI TPSDEFRSGG 240 PLKQNLTSHV GPTTLAMFLS SHYAGQDLVP KFRGGESWKK VFGPVYIYLN SGAVGDNPLW 300 LWEDAKIQMM NEVQSWPYSF PASEDFLKSD QRGNVSGRLL VLDRYVCTDL IPANSAYVGL 360 APPGDAGSWQ RECKDYQFWT RADENGFFTI KNVRPGDYNL FAWVPGFVGD YKFGDFMKIT 420 SGSYIELGEL VYEPPRDGPT LWEIGIPDRS AAEFYAPDPS PQHINKLFIN HPDRFRQYGL 480 WDRYSELYPD ADLVYTIGVS DYTKDWFYAQ APRKKVDNTL QGTTWQIKFE ICSVVKGSTY 540 KLRVAIASAT LAELQIRVND PNARRPVFTS GLIGRDNSIA RHGIQGIYWL YHVNIPGSLL 600 VDGTNTIYFS QPRCTSPFQG IMYDYIRLEG PPCEEI* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.004 | 380 | 407 | 28 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 5.0e-32 | 331 | 430 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-52 | 442 | 629 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-74 | 14 | 292 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-104 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 633 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 633 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 17 | 632 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 631 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 5 | 633 | 5 | 635 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.00002 | 377 | 607 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.00002 | 377 | 607 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.00002 | 377 | 607 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.00002 | 377 | 607 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 1nkg_A | 0.00002 | 377 | 607 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX706079 | 234 | 404 | 637 | 0 |
CX706319 | 231 | 407 | 637 | 0 |
GO266963 | 263 | 1 | 263 | 0 |
GW864372 | 311 | 144 | 454 | 0 |
DY293973 | 350 | 1 | 344 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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